Strain Fitness in Escherichia coli BL21 around ECD_03515

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03514 and ECD_03515 are separated by 9 nucleotidesECD_03515 and ECD_t00063 are separated by 292 nucleotidesECD_t00063 and ECD_03516 are separated by 303 nucleotides ECD_03514: ECD_03514 - putative alpha-glucosidase, at 3,699,696 to 3,702,014 _03514 ECD_03515: ECD_03515 - putative transporter, at 3,702,024 to 3,703,406 _03515 ECD_t00063: ECD_t00063 - tRNA-Sec, at 3,703,699 to 3,703,789 _t00063 ECD_03516: ECD_03516 - Int, at 3,704,093 to 3,705,277 _03516 Position (kb) 3702 3703 3704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3701.138 kb on + strand, within ECD_03514at 3701.139 kb on - strand, within ECD_03514at 3701.173 kb on + strand, within ECD_03514at 3701.184 kb on - strand, within ECD_03514at 3701.253 kb on - strand, within ECD_03514at 3701.254 kb on + strand, within ECD_03514at 3701.255 kb on - strand, within ECD_03514at 3701.255 kb on - strand, within ECD_03514at 3701.265 kb on + strand, within ECD_03514at 3701.266 kb on - strand, within ECD_03514at 3701.309 kb on - strand, within ECD_03514at 3701.417 kb on - strand, within ECD_03514at 3701.417 kb on - strand, within ECD_03514at 3701.417 kb on - strand, within ECD_03514at 3701.417 kb on - strand, within ECD_03514at 3701.479 kb on - strand, within ECD_03514at 3701.508 kb on - strand, within ECD_03514at 3701.567 kb on + strand, within ECD_03514at 3701.567 kb on + strand, within ECD_03514at 3701.569 kb on + strand, within ECD_03514at 3701.569 kb on + strand, within ECD_03514at 3701.570 kb on - strand, within ECD_03514at 3701.570 kb on - strand, within ECD_03514at 3701.599 kb on + strand, within ECD_03514at 3701.600 kb on - strand, within ECD_03514at 3701.629 kb on + strand, within ECD_03514at 3701.630 kb on + strand, within ECD_03514at 3701.631 kb on - strand, within ECD_03514at 3701.631 kb on - strand, within ECD_03514at 3701.692 kb on - strand, within ECD_03514at 3701.692 kb on - strand, within ECD_03514at 3701.706 kb on - strand, within ECD_03514at 3701.826 kb on - strandat 3701.826 kb on - strandat 3701.855 kb on + strandat 3701.856 kb on - strandat 3701.882 kb on + strandat 3701.883 kb on - strandat 3701.883 kb on - strandat 3701.883 kb on - strandat 3701.911 kb on + strandat 3701.912 kb on - strandat 3701.912 kb on - strandat 3701.912 kb on - strandat 3701.912 kb on - strandat 3701.912 kb on - strandat 3701.912 kb on - strandat 3702.006 kb on - strandat 3702.025 kb on + strandat 3702.026 kb on - strandat 3702.026 kb on - strandat 3702.026 kb on - strandat 3702.125 kb on - strandat 3702.127 kb on + strandat 3702.192 kb on - strand, within ECD_03515at 3702.200 kb on + strand, within ECD_03515at 3702.341 kb on + strand, within ECD_03515at 3702.396 kb on - strand, within ECD_03515at 3702.446 kb on + strand, within ECD_03515at 3702.447 kb on - strand, within ECD_03515at 3702.447 kb on - strand, within ECD_03515at 3702.524 kb on + strand, within ECD_03515at 3702.524 kb on + strand, within ECD_03515at 3702.525 kb on - strand, within ECD_03515at 3702.593 kb on - strand, within ECD_03515at 3702.593 kb on - strand, within ECD_03515at 3702.593 kb on - strand, within ECD_03515at 3702.593 kb on - strand, within ECD_03515at 3702.593 kb on - strand, within ECD_03515at 3702.646 kb on + strand, within ECD_03515at 3702.646 kb on + strand, within ECD_03515at 3702.646 kb on + strand, within ECD_03515at 3702.646 kb on + strand, within ECD_03515at 3702.647 kb on - strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.649 kb on + strand, within ECD_03515at 3702.650 kb on - strand, within ECD_03515at 3702.650 kb on - strand, within ECD_03515at 3702.650 kb on - strand, within ECD_03515at 3702.650 kb on - strand, within ECD_03515at 3702.670 kb on - strand, within ECD_03515at 3702.687 kb on - strand, within ECD_03515at 3702.703 kb on - strand, within ECD_03515at 3702.737 kb on + strand, within ECD_03515at 3702.737 kb on + strand, within ECD_03515at 3702.738 kb on - strand, within ECD_03515at 3702.738 kb on - strand, within ECD_03515at 3702.738 kb on - strand, within ECD_03515at 3702.738 kb on - strand, within ECD_03515at 3702.758 kb on + strand, within ECD_03515at 3702.759 kb on - strand, within ECD_03515at 3702.770 kb on + strand, within ECD_03515at 3702.770 kb on + strand, within ECD_03515at 3702.771 kb on - strand, within ECD_03515at 3702.771 kb on - strand, within ECD_03515at 3702.875 kb on + strand, within ECD_03515at 3702.876 kb on - strand, within ECD_03515at 3702.876 kb on - strand, within ECD_03515at 3702.892 kb on - strand, within ECD_03515at 3702.921 kb on - strand, within ECD_03515at 3702.921 kb on - strand, within ECD_03515at 3702.974 kb on + strand, within ECD_03515at 3702.975 kb on - strand, within ECD_03515at 3703.019 kb on - strand, within ECD_03515at 3703.038 kb on - strand, within ECD_03515at 3703.039 kb on + strand, within ECD_03515at 3703.040 kb on - strand, within ECD_03515at 3703.040 kb on - strand, within ECD_03515at 3703.040 kb on - strand, within ECD_03515at 3703.040 kb on - strand, within ECD_03515at 3703.044 kb on + strand, within ECD_03515at 3703.049 kb on + strand, within ECD_03515at 3703.049 kb on + strand, within ECD_03515at 3703.050 kb on - strand, within ECD_03515at 3703.061 kb on - strand, within ECD_03515at 3703.061 kb on - strand, within ECD_03515at 3703.065 kb on - strand, within ECD_03515at 3703.076 kb on - strand, within ECD_03515at 3703.112 kb on + strand, within ECD_03515at 3703.113 kb on - strand, within ECD_03515at 3703.115 kb on - strand, within ECD_03515at 3703.313 kb on + strandat 3703.313 kb on + strandat 3703.313 kb on + strandat 3703.314 kb on - strandat 3703.315 kb on + strandat 3703.323 kb on + strandat 3703.324 kb on - strandat 3703.366 kb on + strandat 3703.424 kb on + strandat 3703.424 kb on + strandat 3703.424 kb on + strandat 3703.425 kb on - strandat 3703.425 kb on - strandat 3703.426 kb on + strandat 3703.427 kb on - strandat 3703.427 kb on - strandat 3703.581 kb on + strandat 3703.581 kb on + strandat 3703.600 kb on + strandat 3703.600 kb on + strandat 3703.611 kb on + strandat 3703.611 kb on + strandat 3703.611 kb on + strandat 3703.642 kb on + strandat 3703.659 kb on - strandat 3703.662 kb on + strandat 3703.663 kb on - strandat 3703.663 kb on - strandat 3703.663 kb on - strandat 3703.664 kb on + strandat 3703.684 kb on + strandat 3703.685 kb on - strandat 3703.837 kb on - strandat 3704.007 kb on + strandat 3704.007 kb on + strandat 3704.008 kb on - strandat 3704.145 kb on - strandat 3704.167 kb on + strandat 3704.167 kb on + strandat 3704.168 kb on - strandat 3704.171 kb on + strandat 3704.171 kb on + strandat 3704.171 kb on + strandat 3704.171 kb on + strandat 3704.172 kb on - strandat 3704.172 kb on - strandat 3704.172 kb on - strandat 3704.198 kb on - strandat 3704.201 kb on + strandat 3704.202 kb on - strandat 3704.256 kb on + strand, within ECD_03516at 3704.256 kb on + strand, within ECD_03516at 3704.257 kb on - strand, within ECD_03516at 3704.257 kb on - strand, within ECD_03516at 3704.268 kb on + strand, within ECD_03516at 3704.268 kb on + strand, within ECD_03516at 3704.268 kb on + strand, within ECD_03516at 3704.268 kb on + strand, within ECD_03516at 3704.268 kb on + strand, within ECD_03516at 3704.269 kb on - strand, within ECD_03516at 3704.269 kb on - strand, within ECD_03516at 3704.269 kb on - strand, within ECD_03516at 3704.269 kb on - strand, within ECD_03516at 3704.269 kb on - strand, within ECD_03516

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,701,138 + ECD_03514 0.62 -0.5
3,701,139 - ECD_03514 0.62 +0.7
3,701,173 + ECD_03514 0.64 +0.8
3,701,184 - ECD_03514 0.64 -0.4
3,701,253 - ECD_03514 0.67 -0.5
3,701,254 + ECD_03514 0.67 -2.4
3,701,255 - ECD_03514 0.67 -2.3
3,701,255 - ECD_03514 0.67 +0.5
3,701,265 + ECD_03514 0.68 -0.8
3,701,266 - ECD_03514 0.68 -3.0
3,701,309 - ECD_03514 0.70 -0.3
3,701,417 - ECD_03514 0.74 -2.4
3,701,417 - ECD_03514 0.74 +0.6
3,701,417 - ECD_03514 0.74 +0.2
3,701,417 - ECD_03514 0.74 -1.7
3,701,479 - ECD_03514 0.77 -0.0
3,701,508 - ECD_03514 0.78 +0.5
3,701,567 + ECD_03514 0.81 -1.0
3,701,567 + ECD_03514 0.81 -0.0
3,701,569 + ECD_03514 0.81 +1.5
3,701,569 + ECD_03514 0.81 -0.9
3,701,570 - ECD_03514 0.81 -0.3
3,701,570 - ECD_03514 0.81 -1.7
3,701,599 + ECD_03514 0.82 -2.4
3,701,600 - ECD_03514 0.82 -0.3
3,701,629 + ECD_03514 0.83 -0.1
3,701,630 + ECD_03514 0.83 -0.5
3,701,631 - ECD_03514 0.83 -0.6
3,701,631 - ECD_03514 0.83 +0.1
3,701,692 - ECD_03514 0.86 +0.6
3,701,692 - ECD_03514 0.86 +0.7
3,701,706 - ECD_03514 0.87 +0.2
3,701,826 - -1.0
3,701,826 - -1.9
3,701,855 + -0.6
3,701,856 - -0.9
3,701,882 + -1.7
3,701,883 - +0.5
3,701,883 - +0.8
3,701,883 - -0.0
3,701,911 + +0.3
3,701,912 - +0.1
3,701,912 - -0.1
3,701,912 - +1.9
3,701,912 - +0.5
3,701,912 - +1.2
3,701,912 - +0.5
3,702,006 - +1.0
3,702,025 + +0.4
3,702,026 - -0.1
3,702,026 - +0.9
3,702,026 - -0.2
3,702,125 - -2.3
3,702,127 + -0.2
3,702,192 - ECD_03515 0.12 -1.0
3,702,200 + ECD_03515 0.13 +1.0
3,702,341 + ECD_03515 0.23 -1.5
3,702,396 - ECD_03515 0.27 +1.2
3,702,446 + ECD_03515 0.31 +0.2
3,702,447 - ECD_03515 0.31 +0.4
3,702,447 - ECD_03515 0.31 +1.5
3,702,524 + ECD_03515 0.36 -2.3
3,702,524 + ECD_03515 0.36 -2.1
3,702,525 - ECD_03515 0.36 +2.2
3,702,593 - ECD_03515 0.41 +1.0
3,702,593 - ECD_03515 0.41 +0.2
3,702,593 - ECD_03515 0.41 -0.6
3,702,593 - ECD_03515 0.41 -0.2
3,702,593 - ECD_03515 0.41 -0.4
3,702,646 + ECD_03515 0.45 +0.8
3,702,646 + ECD_03515 0.45 -0.1
3,702,646 + ECD_03515 0.45 -0.7
3,702,646 + ECD_03515 0.45 +1.7
3,702,647 - ECD_03515 0.45 -0.5
3,702,649 + ECD_03515 0.45 +0.4
3,702,649 + ECD_03515 0.45 -3.2
3,702,649 + ECD_03515 0.45 -0.7
3,702,649 + ECD_03515 0.45 +0.8
3,702,649 + ECD_03515 0.45 -1.7
3,702,649 + ECD_03515 0.45 +0.1
3,702,649 + ECD_03515 0.45 +0.2
3,702,650 - ECD_03515 0.45 -3.0
3,702,650 - ECD_03515 0.45 +0.6
3,702,650 - ECD_03515 0.45 +0.6
3,702,650 - ECD_03515 0.45 -1.0
3,702,670 - ECD_03515 0.47 -1.0
3,702,687 - ECD_03515 0.48 -2.7
3,702,703 - ECD_03515 0.49 +1.2
3,702,737 + ECD_03515 0.52 -0.2
3,702,737 + ECD_03515 0.52 +0.8
3,702,738 - ECD_03515 0.52 -0.1
3,702,738 - ECD_03515 0.52 -2.0
3,702,738 - ECD_03515 0.52 -0.3
3,702,738 - ECD_03515 0.52 -2.0
3,702,758 + ECD_03515 0.53 -0.8
3,702,759 - ECD_03515 0.53 -0.1
3,702,770 + ECD_03515 0.54 +1.1
3,702,770 + ECD_03515 0.54 -1.8
3,702,771 - ECD_03515 0.54 +0.5
3,702,771 - ECD_03515 0.54 +0.2
3,702,875 + ECD_03515 0.62 +0.9
3,702,876 - ECD_03515 0.62 +1.2
3,702,876 - ECD_03515 0.62 -1.0
3,702,892 - ECD_03515 0.63 +1.6
3,702,921 - ECD_03515 0.65 +0.5
3,702,921 - ECD_03515 0.65 -2.5
3,702,974 + ECD_03515 0.69 -2.0
3,702,975 - ECD_03515 0.69 +0.8
3,703,019 - ECD_03515 0.72 -0.4
3,703,038 - ECD_03515 0.73 +0.2
3,703,039 + ECD_03515 0.73 +0.2
3,703,040 - ECD_03515 0.73 -1.1
3,703,040 - ECD_03515 0.73 -3.2
3,703,040 - ECD_03515 0.73 -0.9
3,703,040 - ECD_03515 0.73 +0.5
3,703,044 + ECD_03515 0.74 +0.4
3,703,049 + ECD_03515 0.74 -1.1
3,703,049 + ECD_03515 0.74 +2.6
3,703,050 - ECD_03515 0.74 +0.5
3,703,061 - ECD_03515 0.75 -0.5
3,703,061 - ECD_03515 0.75 +0.5
3,703,065 - ECD_03515 0.75 -0.4
3,703,076 - ECD_03515 0.76 +0.5
3,703,112 + ECD_03515 0.79 -0.4
3,703,113 - ECD_03515 0.79 -1.4
3,703,115 - ECD_03515 0.79 -0.9
3,703,313 + -1.2
3,703,313 + -1.7
3,703,313 + +0.1
3,703,314 - -1.3
3,703,315 + -2.0
3,703,323 + +1.5
3,703,324 - +1.1
3,703,366 + -0.4
3,703,424 + +0.9
3,703,424 + +0.5
3,703,424 + -0.4
3,703,425 - +0.3
3,703,425 - -0.6
3,703,426 + +0.1
3,703,427 - +0.3
3,703,427 - +0.4
3,703,581 + +0.1
3,703,581 + +0.1
3,703,600 + +0.1
3,703,600 + -0.1
3,703,611 + -0.3
3,703,611 + -0.6
3,703,611 + -0.2
3,703,642 + -0.9
3,703,659 - -0.9
3,703,662 + +0.5
3,703,663 - -1.7
3,703,663 - -0.7
3,703,663 - +0.2
3,703,664 + -2.2
3,703,684 + +0.8
3,703,685 - +1.2
3,703,837 - +0.0
3,704,007 + +0.2
3,704,007 + -1.3
3,704,008 - -0.1
3,704,145 - -0.3
3,704,167 + -0.0
3,704,167 + +1.4
3,704,168 - -0.7
3,704,171 + -1.5
3,704,171 + -2.4
3,704,171 + -2.1
3,704,171 + -0.1
3,704,172 - +0.5
3,704,172 - -0.2
3,704,172 - -1.6
3,704,198 - +0.2
3,704,201 + -1.6
3,704,202 - -0.5
3,704,256 + ECD_03516 0.14 +0.7
3,704,256 + ECD_03516 0.14 -0.0
3,704,257 - ECD_03516 0.14 +0.7
3,704,257 - ECD_03516 0.14 -0.5
3,704,268 + ECD_03516 0.15 -0.3
3,704,268 + ECD_03516 0.15 +0.4
3,704,268 + ECD_03516 0.15 -1.2
3,704,268 + ECD_03516 0.15 -2.8
3,704,268 + ECD_03516 0.15 +0.2
3,704,269 - ECD_03516 0.15 -0.2
3,704,269 - ECD_03516 0.15 -0.3
3,704,269 - ECD_03516 0.15 -1.2
3,704,269 - ECD_03516 0.15 -1.6
3,704,269 - ECD_03516 0.15 -1.4

Or see this region's nucleotide sequence