Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03514 and ECD_03515 are separated by 9 nucleotides ECD_03515 and ECD_t00063 are separated by 292 nucleotides ECD_t00063 and ECD_03516 are separated by 303 nucleotides
ECD_03514: ECD_03514 - putative alpha-glucosidase, at 3,699,696 to 3,702,014
_03514
ECD_03515: ECD_03515 - putative transporter, at 3,702,024 to 3,703,406
_03515
ECD_t00063: ECD_t00063 - tRNA-Sec, at 3,703,699 to 3,703,789
_t00063
ECD_03516: ECD_03516 - Int, at 3,704,093 to 3,705,277
_03516
Position (kb)
3702
3703
3704 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3701.138 kb on + strand, within ECD_03514 at 3701.139 kb on - strand, within ECD_03514 at 3701.173 kb on + strand, within ECD_03514 at 3701.184 kb on - strand, within ECD_03514 at 3701.253 kb on - strand, within ECD_03514 at 3701.254 kb on + strand, within ECD_03514 at 3701.255 kb on - strand, within ECD_03514 at 3701.255 kb on - strand, within ECD_03514 at 3701.265 kb on + strand, within ECD_03514 at 3701.266 kb on - strand, within ECD_03514 at 3701.309 kb on - strand, within ECD_03514 at 3701.417 kb on - strand, within ECD_03514 at 3701.417 kb on - strand, within ECD_03514 at 3701.417 kb on - strand, within ECD_03514 at 3701.417 kb on - strand, within ECD_03514 at 3701.479 kb on - strand, within ECD_03514 at 3701.508 kb on - strand, within ECD_03514 at 3701.567 kb on + strand, within ECD_03514 at 3701.567 kb on + strand, within ECD_03514 at 3701.569 kb on + strand, within ECD_03514 at 3701.569 kb on + strand, within ECD_03514 at 3701.570 kb on - strand, within ECD_03514 at 3701.570 kb on - strand, within ECD_03514 at 3701.599 kb on + strand, within ECD_03514 at 3701.600 kb on - strand, within ECD_03514 at 3701.629 kb on + strand, within ECD_03514 at 3701.630 kb on + strand, within ECD_03514 at 3701.631 kb on - strand, within ECD_03514 at 3701.631 kb on - strand, within ECD_03514 at 3701.692 kb on - strand, within ECD_03514 at 3701.692 kb on - strand, within ECD_03514 at 3701.706 kb on - strand, within ECD_03514 at 3701.826 kb on - strand at 3701.826 kb on - strand at 3701.855 kb on + strand at 3701.856 kb on - strand at 3701.882 kb on + strand at 3701.883 kb on - strand at 3701.883 kb on - strand at 3701.883 kb on - strand at 3701.911 kb on + strand at 3701.912 kb on - strand at 3701.912 kb on - strand at 3701.912 kb on - strand at 3701.912 kb on - strand at 3701.912 kb on - strand at 3701.912 kb on - strand at 3702.006 kb on - strand at 3702.025 kb on + strand at 3702.026 kb on - strand at 3702.026 kb on - strand at 3702.026 kb on - strand at 3702.125 kb on - strand at 3702.127 kb on + strand at 3702.192 kb on - strand, within ECD_03515 at 3702.200 kb on + strand, within ECD_03515 at 3702.341 kb on + strand, within ECD_03515 at 3702.396 kb on - strand, within ECD_03515 at 3702.446 kb on + strand, within ECD_03515 at 3702.447 kb on - strand, within ECD_03515 at 3702.447 kb on - strand, within ECD_03515 at 3702.524 kb on + strand, within ECD_03515 at 3702.524 kb on + strand, within ECD_03515 at 3702.525 kb on - strand, within ECD_03515 at 3702.593 kb on - strand, within ECD_03515 at 3702.593 kb on - strand, within ECD_03515 at 3702.593 kb on - strand, within ECD_03515 at 3702.593 kb on - strand, within ECD_03515 at 3702.593 kb on - strand, within ECD_03515 at 3702.646 kb on + strand, within ECD_03515 at 3702.646 kb on + strand, within ECD_03515 at 3702.646 kb on + strand, within ECD_03515 at 3702.646 kb on + strand, within ECD_03515 at 3702.647 kb on - strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.649 kb on + strand, within ECD_03515 at 3702.650 kb on - strand, within ECD_03515 at 3702.650 kb on - strand, within ECD_03515 at 3702.650 kb on - strand, within ECD_03515 at 3702.650 kb on - strand, within ECD_03515 at 3702.670 kb on - strand, within ECD_03515 at 3702.687 kb on - strand, within ECD_03515 at 3702.703 kb on - strand, within ECD_03515 at 3702.737 kb on + strand, within ECD_03515 at 3702.737 kb on + strand, within ECD_03515 at 3702.738 kb on - strand, within ECD_03515 at 3702.738 kb on - strand, within ECD_03515 at 3702.738 kb on - strand, within ECD_03515 at 3702.738 kb on - strand, within ECD_03515 at 3702.758 kb on + strand, within ECD_03515 at 3702.759 kb on - strand, within ECD_03515 at 3702.770 kb on + strand, within ECD_03515 at 3702.770 kb on + strand, within ECD_03515 at 3702.771 kb on - strand, within ECD_03515 at 3702.771 kb on - strand, within ECD_03515 at 3702.875 kb on + strand, within ECD_03515 at 3702.876 kb on - strand, within ECD_03515 at 3702.876 kb on - strand, within ECD_03515 at 3702.892 kb on - strand, within ECD_03515 at 3702.921 kb on - strand, within ECD_03515 at 3702.921 kb on - strand, within ECD_03515 at 3702.974 kb on + strand, within ECD_03515 at 3702.975 kb on - strand, within ECD_03515 at 3703.019 kb on - strand, within ECD_03515 at 3703.038 kb on - strand, within ECD_03515 at 3703.039 kb on + strand, within ECD_03515 at 3703.040 kb on - strand, within ECD_03515 at 3703.040 kb on - strand, within ECD_03515 at 3703.040 kb on - strand, within ECD_03515 at 3703.040 kb on - strand, within ECD_03515 at 3703.044 kb on + strand, within ECD_03515 at 3703.049 kb on + strand, within ECD_03515 at 3703.049 kb on + strand, within ECD_03515 at 3703.050 kb on - strand, within ECD_03515 at 3703.061 kb on - strand, within ECD_03515 at 3703.061 kb on - strand, within ECD_03515 at 3703.065 kb on - strand, within ECD_03515 at 3703.076 kb on - strand, within ECD_03515 at 3703.112 kb on + strand, within ECD_03515 at 3703.113 kb on - strand, within ECD_03515 at 3703.115 kb on - strand, within ECD_03515 at 3703.313 kb on + strand at 3703.313 kb on + strand at 3703.313 kb on + strand at 3703.314 kb on - strand at 3703.315 kb on + strand at 3703.323 kb on + strand at 3703.324 kb on - strand at 3703.366 kb on + strand at 3703.424 kb on + strand at 3703.424 kb on + strand at 3703.424 kb on + strand at 3703.425 kb on - strand at 3703.425 kb on - strand at 3703.426 kb on + strand at 3703.427 kb on - strand at 3703.427 kb on - strand at 3703.581 kb on + strand at 3703.581 kb on + strand at 3703.600 kb on + strand at 3703.600 kb on + strand at 3703.611 kb on + strand at 3703.611 kb on + strand at 3703.611 kb on + strand at 3703.642 kb on + strand at 3703.659 kb on - strand at 3703.662 kb on + strand at 3703.663 kb on - strand at 3703.663 kb on - strand at 3703.663 kb on - strand at 3703.664 kb on + strand at 3703.684 kb on + strand at 3703.685 kb on - strand at 3703.837 kb on - strand at 3704.007 kb on + strand at 3704.007 kb on + strand at 3704.008 kb on - strand at 3704.145 kb on - strand at 3704.167 kb on + strand at 3704.167 kb on + strand at 3704.168 kb on - strand at 3704.171 kb on + strand at 3704.171 kb on + strand at 3704.171 kb on + strand at 3704.171 kb on + strand at 3704.172 kb on - strand at 3704.172 kb on - strand at 3704.172 kb on - strand at 3704.198 kb on - strand at 3704.201 kb on + strand at 3704.202 kb on - strand at 3704.256 kb on + strand, within ECD_03516 at 3704.256 kb on + strand, within ECD_03516 at 3704.257 kb on - strand, within ECD_03516 at 3704.257 kb on - strand, within ECD_03516 at 3704.268 kb on + strand, within ECD_03516 at 3704.268 kb on + strand, within ECD_03516 at 3704.268 kb on + strand, within ECD_03516 at 3704.268 kb on + strand, within ECD_03516 at 3704.268 kb on + strand, within ECD_03516 at 3704.269 kb on - strand, within ECD_03516 at 3704.269 kb on - strand, within ECD_03516 at 3704.269 kb on - strand, within ECD_03516 at 3704.269 kb on - strand, within ECD_03516 at 3704.269 kb on - strand, within ECD_03516
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,701,138 + ECD_03514 0.62 -0.5 3,701,139 - ECD_03514 0.62 +0.7 3,701,173 + ECD_03514 0.64 +0.8 3,701,184 - ECD_03514 0.64 -0.4 3,701,253 - ECD_03514 0.67 -0.5 3,701,254 + ECD_03514 0.67 -2.4 3,701,255 - ECD_03514 0.67 -2.3 3,701,255 - ECD_03514 0.67 +0.5 3,701,265 + ECD_03514 0.68 -0.8 3,701,266 - ECD_03514 0.68 -3.0 3,701,309 - ECD_03514 0.70 -0.3 3,701,417 - ECD_03514 0.74 -2.4 3,701,417 - ECD_03514 0.74 +0.6 3,701,417 - ECD_03514 0.74 +0.2 3,701,417 - ECD_03514 0.74 -1.7 3,701,479 - ECD_03514 0.77 -0.0 3,701,508 - ECD_03514 0.78 +0.5 3,701,567 + ECD_03514 0.81 -1.0 3,701,567 + ECD_03514 0.81 -0.0 3,701,569 + ECD_03514 0.81 +1.5 3,701,569 + ECD_03514 0.81 -0.9 3,701,570 - ECD_03514 0.81 -0.3 3,701,570 - ECD_03514 0.81 -1.7 3,701,599 + ECD_03514 0.82 -2.4 3,701,600 - ECD_03514 0.82 -0.3 3,701,629 + ECD_03514 0.83 -0.1 3,701,630 + ECD_03514 0.83 -0.5 3,701,631 - ECD_03514 0.83 -0.6 3,701,631 - ECD_03514 0.83 +0.1 3,701,692 - ECD_03514 0.86 +0.6 3,701,692 - ECD_03514 0.86 +0.7 3,701,706 - ECD_03514 0.87 +0.2 3,701,826 - -1.0 3,701,826 - -1.9 3,701,855 + -0.6 3,701,856 - -0.9 3,701,882 + -1.7 3,701,883 - +0.5 3,701,883 - +0.8 3,701,883 - -0.0 3,701,911 + +0.3 3,701,912 - +0.1 3,701,912 - -0.1 3,701,912 - +1.9 3,701,912 - +0.5 3,701,912 - +1.2 3,701,912 - +0.5 3,702,006 - +1.0 3,702,025 + +0.4 3,702,026 - -0.1 3,702,026 - +0.9 3,702,026 - -0.2 3,702,125 - -2.3 3,702,127 + -0.2 3,702,192 - ECD_03515 0.12 -1.0 3,702,200 + ECD_03515 0.13 +1.0 3,702,341 + ECD_03515 0.23 -1.5 3,702,396 - ECD_03515 0.27 +1.2 3,702,446 + ECD_03515 0.31 +0.2 3,702,447 - ECD_03515 0.31 +0.4 3,702,447 - ECD_03515 0.31 +1.5 3,702,524 + ECD_03515 0.36 -2.3 3,702,524 + ECD_03515 0.36 -2.1 3,702,525 - ECD_03515 0.36 +2.2 3,702,593 - ECD_03515 0.41 +1.0 3,702,593 - ECD_03515 0.41 +0.2 3,702,593 - ECD_03515 0.41 -0.6 3,702,593 - ECD_03515 0.41 -0.2 3,702,593 - ECD_03515 0.41 -0.4 3,702,646 + ECD_03515 0.45 +0.8 3,702,646 + ECD_03515 0.45 -0.1 3,702,646 + ECD_03515 0.45 -0.7 3,702,646 + ECD_03515 0.45 +1.7 3,702,647 - ECD_03515 0.45 -0.5 3,702,649 + ECD_03515 0.45 +0.4 3,702,649 + ECD_03515 0.45 -3.2 3,702,649 + ECD_03515 0.45 -0.7 3,702,649 + ECD_03515 0.45 +0.8 3,702,649 + ECD_03515 0.45 -1.7 3,702,649 + ECD_03515 0.45 +0.1 3,702,649 + ECD_03515 0.45 +0.2 3,702,650 - ECD_03515 0.45 -3.0 3,702,650 - ECD_03515 0.45 +0.6 3,702,650 - ECD_03515 0.45 +0.6 3,702,650 - ECD_03515 0.45 -1.0 3,702,670 - ECD_03515 0.47 -1.0 3,702,687 - ECD_03515 0.48 -2.7 3,702,703 - ECD_03515 0.49 +1.2 3,702,737 + ECD_03515 0.52 -0.2 3,702,737 + ECD_03515 0.52 +0.8 3,702,738 - ECD_03515 0.52 -0.1 3,702,738 - ECD_03515 0.52 -2.0 3,702,738 - ECD_03515 0.52 -0.3 3,702,738 - ECD_03515 0.52 -2.0 3,702,758 + ECD_03515 0.53 -0.8 3,702,759 - ECD_03515 0.53 -0.1 3,702,770 + ECD_03515 0.54 +1.1 3,702,770 + ECD_03515 0.54 -1.8 3,702,771 - ECD_03515 0.54 +0.5 3,702,771 - ECD_03515 0.54 +0.2 3,702,875 + ECD_03515 0.62 +0.9 3,702,876 - ECD_03515 0.62 +1.2 3,702,876 - ECD_03515 0.62 -1.0 3,702,892 - ECD_03515 0.63 +1.6 3,702,921 - ECD_03515 0.65 +0.5 3,702,921 - ECD_03515 0.65 -2.5 3,702,974 + ECD_03515 0.69 -2.0 3,702,975 - ECD_03515 0.69 +0.8 3,703,019 - ECD_03515 0.72 -0.4 3,703,038 - ECD_03515 0.73 +0.2 3,703,039 + ECD_03515 0.73 +0.2 3,703,040 - ECD_03515 0.73 -1.1 3,703,040 - ECD_03515 0.73 -3.2 3,703,040 - ECD_03515 0.73 -0.9 3,703,040 - ECD_03515 0.73 +0.5 3,703,044 + ECD_03515 0.74 +0.4 3,703,049 + ECD_03515 0.74 -1.1 3,703,049 + ECD_03515 0.74 +2.6 3,703,050 - ECD_03515 0.74 +0.5 3,703,061 - ECD_03515 0.75 -0.5 3,703,061 - ECD_03515 0.75 +0.5 3,703,065 - ECD_03515 0.75 -0.4 3,703,076 - ECD_03515 0.76 +0.5 3,703,112 + ECD_03515 0.79 -0.4 3,703,113 - ECD_03515 0.79 -1.4 3,703,115 - ECD_03515 0.79 -0.9 3,703,313 + -1.2 3,703,313 + -1.7 3,703,313 + +0.1 3,703,314 - -1.3 3,703,315 + -2.0 3,703,323 + +1.5 3,703,324 - +1.1 3,703,366 + -0.4 3,703,424 + +0.9 3,703,424 + +0.5 3,703,424 + -0.4 3,703,425 - +0.3 3,703,425 - -0.6 3,703,426 + +0.1 3,703,427 - +0.3 3,703,427 - +0.4 3,703,581 + +0.1 3,703,581 + +0.1 3,703,600 + +0.1 3,703,600 + -0.1 3,703,611 + -0.3 3,703,611 + -0.6 3,703,611 + -0.2 3,703,642 + -0.9 3,703,659 - -0.9 3,703,662 + +0.5 3,703,663 - -1.7 3,703,663 - -0.7 3,703,663 - +0.2 3,703,664 + -2.2 3,703,684 + +0.8 3,703,685 - +1.2 3,703,837 - +0.0 3,704,007 + +0.2 3,704,007 + -1.3 3,704,008 - -0.1 3,704,145 - -0.3 3,704,167 + -0.0 3,704,167 + +1.4 3,704,168 - -0.7 3,704,171 + -1.5 3,704,171 + -2.4 3,704,171 + -2.1 3,704,171 + -0.1 3,704,172 - +0.5 3,704,172 - -0.2 3,704,172 - -1.6 3,704,198 - +0.2 3,704,201 + -1.6 3,704,202 - -0.5 3,704,256 + ECD_03516 0.14 +0.7 3,704,256 + ECD_03516 0.14 -0.0 3,704,257 - ECD_03516 0.14 +0.7 3,704,257 - ECD_03516 0.14 -0.5 3,704,268 + ECD_03516 0.15 -0.3 3,704,268 + ECD_03516 0.15 +0.4 3,704,268 + ECD_03516 0.15 -1.2 3,704,268 + ECD_03516 0.15 -2.8 3,704,268 + ECD_03516 0.15 +0.2 3,704,269 - ECD_03516 0.15 -0.2 3,704,269 - ECD_03516 0.15 -0.3 3,704,269 - ECD_03516 0.15 -1.2 3,704,269 - ECD_03516 0.15 -1.6 3,704,269 - ECD_03516 0.15 -1.4
Or see this region's nucleotide sequence