Strain Fitness in Escherichia coli BL21 around ECD_03474

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03473 and ECD_03474 are separated by 238 nucleotidesECD_03474 and ECD_03475 are separated by 9 nucleotides ECD_03473: ECD_03473 - LPS(HepIII)-glucuronic acid glycosyltransferase, at 3,658,248 to 3,659,282 _03473 ECD_03474: ECD_03474 - L-threonine 3-dehydrogenase, NAD(P)-binding, at 3,659,521 to 3,660,546 _03474 ECD_03475: ECD_03475 - glycine C-acetyltransferase, at 3,660,556 to 3,661,752 _03475 Position (kb) 3659 3660 3661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3658.626 kb on - strand, within ECD_03473at 3658.626 kb on - strand, within ECD_03473at 3658.644 kb on - strand, within ECD_03473at 3658.645 kb on + strand, within ECD_03473at 3658.646 kb on - strand, within ECD_03473at 3658.976 kb on - strand, within ECD_03473at 3658.976 kb on - strand, within ECD_03473at 3659.021 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.120 kb on - strand, within ECD_03473at 3659.163 kb on - strand, within ECD_03473at 3659.240 kb on - strandat 3659.283 kb on - strandat 3659.341 kb on + strandat 3659.414 kb on + strandat 3659.415 kb on - strandat 3659.416 kb on + strandat 3659.417 kb on - strandat 3659.434 kb on - strandat 3659.448 kb on - strandat 3659.596 kb on - strandat 3659.611 kb on - strandat 3659.691 kb on + strand, within ECD_03474at 3659.742 kb on + strand, within ECD_03474at 3659.743 kb on - strand, within ECD_03474at 3660.015 kb on + strand, within ECD_03474at 3660.016 kb on - strand, within ECD_03474at 3660.018 kb on + strand, within ECD_03474at 3660.019 kb on - strand, within ECD_03474at 3660.019 kb on - strand, within ECD_03474at 3660.019 kb on - strand, within ECD_03474at 3660.133 kb on - strand, within ECD_03474at 3660.133 kb on - strand, within ECD_03474at 3660.333 kb on + strand, within ECD_03474at 3660.334 kb on - strand, within ECD_03474at 3660.353 kb on + strand, within ECD_03474at 3660.353 kb on + strand, within ECD_03474at 3660.353 kb on + strand, within ECD_03474at 3660.353 kb on + strand, within ECD_03474at 3660.354 kb on - strand, within ECD_03474at 3660.354 kb on - strand, within ECD_03474at 3660.354 kb on - strand, within ECD_03474at 3660.411 kb on + strand, within ECD_03474at 3660.412 kb on - strand, within ECD_03474at 3660.412 kb on - strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.413 kb on + strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.414 kb on - strand, within ECD_03474at 3660.456 kb on + strandat 3660.457 kb on - strandat 3660.602 kb on - strandat 3660.602 kb on - strandat 3660.612 kb on + strandat 3660.702 kb on - strand, within ECD_03475at 3660.702 kb on - strand, within ECD_03475at 3660.702 kb on - strand, within ECD_03475at 3660.993 kb on + strand, within ECD_03475at 3660.996 kb on - strand, within ECD_03475at 3661.070 kb on + strand, within ECD_03475at 3661.071 kb on - strand, within ECD_03475at 3661.126 kb on + strand, within ECD_03475at 3661.126 kb on + strand, within ECD_03475at 3661.145 kb on + strand, within ECD_03475at 3661.145 kb on + strand, within ECD_03475at 3661.146 kb on - strand, within ECD_03475at 3661.146 kb on - strand, within ECD_03475at 3661.149 kb on + strand, within ECD_03475at 3661.149 kb on + strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.282 kb on - strand, within ECD_03475at 3661.309 kb on - strand, within ECD_03475at 3661.335 kb on + strand, within ECD_03475at 3661.336 kb on - strand, within ECD_03475at 3661.338 kb on + strand, within ECD_03475at 3661.366 kb on - strand, within ECD_03475at 3661.431 kb on - strand, within ECD_03475

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,658,626 - ECD_03473 0.37 +0.2
3,658,626 - ECD_03473 0.37 +0.3
3,658,644 - ECD_03473 0.38 +1.3
3,658,645 + ECD_03473 0.38 -2.3
3,658,646 - ECD_03473 0.38 -1.5
3,658,976 - ECD_03473 0.70 -1.9
3,658,976 - ECD_03473 0.70 -0.1
3,659,021 - ECD_03473 0.75 -0.2
3,659,120 - ECD_03473 0.84 +0.3
3,659,120 - ECD_03473 0.84 -0.4
3,659,120 - ECD_03473 0.84 -0.2
3,659,163 - ECD_03473 0.88 -0.4
3,659,240 - +1.0
3,659,283 - -0.2
3,659,341 + -1.9
3,659,414 + +0.5
3,659,415 - +0.6
3,659,416 + +0.4
3,659,417 - -0.2
3,659,434 - +1.2
3,659,448 - -0.3
3,659,596 - -1.8
3,659,611 - -1.7
3,659,691 + ECD_03474 0.17 -0.7
3,659,742 + ECD_03474 0.22 -2.9
3,659,743 - ECD_03474 0.22 -3.5
3,660,015 + ECD_03474 0.48 -1.0
3,660,016 - ECD_03474 0.48 +0.3
3,660,018 + ECD_03474 0.48 -1.4
3,660,019 - ECD_03474 0.49 -0.8
3,660,019 - ECD_03474 0.49 -1.4
3,660,019 - ECD_03474 0.49 -0.4
3,660,133 - ECD_03474 0.60 -1.9
3,660,133 - ECD_03474 0.60 -1.0
3,660,333 + ECD_03474 0.79 -0.9
3,660,334 - ECD_03474 0.79 -3.8
3,660,353 + ECD_03474 0.81 -1.4
3,660,353 + ECD_03474 0.81 -2.1
3,660,353 + ECD_03474 0.81 -1.5
3,660,353 + ECD_03474 0.81 -2.5
3,660,354 - ECD_03474 0.81 -3.5
3,660,354 - ECD_03474 0.81 -2.8
3,660,354 - ECD_03474 0.81 -0.3
3,660,411 + ECD_03474 0.87 -2.3
3,660,412 - ECD_03474 0.87 -1.7
3,660,412 - ECD_03474 0.87 -3.3
3,660,413 + ECD_03474 0.87 +0.1
3,660,413 + ECD_03474 0.87 -2.0
3,660,413 + ECD_03474 0.87 -0.9
3,660,413 + ECD_03474 0.87 -1.6
3,660,413 + ECD_03474 0.87 +0.2
3,660,413 + ECD_03474 0.87 -0.9
3,660,413 + ECD_03474 0.87 -2.1
3,660,413 + ECD_03474 0.87 -1.1
3,660,414 - ECD_03474 0.87 -0.6
3,660,414 - ECD_03474 0.87 -0.6
3,660,414 - ECD_03474 0.87 -1.5
3,660,414 - ECD_03474 0.87 -2.8
3,660,414 - ECD_03474 0.87 -0.9
3,660,414 - ECD_03474 0.87 -0.3
3,660,456 + -3.9
3,660,457 - -3.0
3,660,602 - +0.3
3,660,602 - +0.3
3,660,612 + -0.4
3,660,702 - ECD_03475 0.12 -0.4
3,660,702 - ECD_03475 0.12 -0.5
3,660,702 - ECD_03475 0.12 -2.5
3,660,993 + ECD_03475 0.37 -0.4
3,660,996 - ECD_03475 0.37 +0.1
3,661,070 + ECD_03475 0.43 +0.7
3,661,071 - ECD_03475 0.43 -0.4
3,661,126 + ECD_03475 0.48 -0.8
3,661,126 + ECD_03475 0.48 -1.0
3,661,145 + ECD_03475 0.49 -0.3
3,661,145 + ECD_03475 0.49 -0.3
3,661,146 - ECD_03475 0.49 -0.8
3,661,146 - ECD_03475 0.49 +0.5
3,661,149 + ECD_03475 0.50 +0.2
3,661,149 + ECD_03475 0.50 -0.5
3,661,150 - ECD_03475 0.50 +0.0
3,661,150 - ECD_03475 0.50 -0.7
3,661,150 - ECD_03475 0.50 -2.2
3,661,150 - ECD_03475 0.50 -1.3
3,661,282 - ECD_03475 0.61 -0.2
3,661,309 - ECD_03475 0.63 -2.3
3,661,335 + ECD_03475 0.65 -1.7
3,661,336 - ECD_03475 0.65 -2.0
3,661,338 + ECD_03475 0.65 -2.5
3,661,366 - ECD_03475 0.68 -0.4
3,661,431 - ECD_03475 0.73 -0.0

Or see this region's nucleotide sequence