Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03448 and ECD_03449 are separated by 20 nucleotides ECD_03449 and ECD_03450 are separated by 41 nucleotides ECD_03450 and ECD_03451 are separated by 11 nucleotides
ECD_03448: ECD_03448 - Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor, at 3,628,573 to 3,629,445
_03448
ECD_03449: ECD_03449 - putative immunity protein for polymorphic toxin RhsA; HEAT-domain protein; lethality reduction protein, at 3,629,466 to 3,630,308
_03449
ECD_03450: ECD_03450 - putative Rhs-family protein, at 3,630,350 to 3,631,294
_03450
ECD_03451: ECD_03451 - TPR-like repeat protein, at 3,631,306 to 3,631,767
_03451
Position (kb)
3630
3631
3632 Strain fitness (log2 ratio)
-2
-1
0
1 at 3629.365 kb on - strand at 3629.368 kb on - strand at 3629.373 kb on + strand at 3630.239 kb on + strand at 3630.240 kb on - strand at 3630.242 kb on + strand at 3630.242 kb on + strand at 3630.242 kb on + strand at 3630.274 kb on + strand at 3630.321 kb on - strand at 3630.651 kb on - strand, within ECD_03450 at 3630.674 kb on + strand, within ECD_03450 at 3630.692 kb on + strand, within ECD_03450 at 3630.692 kb on + strand, within ECD_03450 at 3630.789 kb on + strand, within ECD_03450 at 3630.789 kb on + strand, within ECD_03450 at 3630.911 kb on - strand, within ECD_03450 at 3631.058 kb on - strand, within ECD_03450 at 3631.300 kb on - strand at 3631.502 kb on - strand, within ECD_03451 at 3631.689 kb on + strand, within ECD_03451 at 3631.798 kb on + strand at 3631.801 kb on + strand at 3631.802 kb on - strand at 3631.826 kb on - strand at 3631.827 kb on + strand at 3631.827 kb on + strand at 3631.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,629,365 - -2.4 3,629,368 - -1.4 3,629,373 + +0.0 3,630,239 + +0.4 3,630,240 - -0.9 3,630,242 + -2.7 3,630,242 + -0.7 3,630,242 + +0.3 3,630,274 + -0.1 3,630,321 - -1.0 3,630,651 - ECD_03450 0.32 +0.4 3,630,674 + ECD_03450 0.34 -0.8 3,630,692 + ECD_03450 0.36 +0.2 3,630,692 + ECD_03450 0.36 -0.5 3,630,789 + ECD_03450 0.46 -0.1 3,630,789 + ECD_03450 0.46 -0.2 3,630,911 - ECD_03450 0.59 -1.2 3,631,058 - ECD_03450 0.75 -0.1 3,631,300 - -0.6 3,631,502 - ECD_03451 0.42 -1.6 3,631,689 + ECD_03451 0.83 -0.1 3,631,798 + -0.9 3,631,801 + -1.1 3,631,802 - -0.8 3,631,826 - +0.5 3,631,827 + -0.7 3,631,827 + -1.3 3,631,867 - +0.7
Or see this region's nucleotide sequence