Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03438 and ECD_03439 are separated by 120 nucleotides ECD_03439 and ECD_03440 are separated by 123 nucleotides
ECD_03438: ECD_03438 - hypothetical protein, at 3,615,417 to 3,617,396
_03438
ECD_03439: ECD_03439 - putative outer membrane protein, at 3,617,517 to 3,618,257
_03439
ECD_03440: ECD_03440 - putative DNA-binding transcriptional regulator, at 3,618,381 to 3,619,355
_03440
Position (kb)
3617
3618
3619 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3616.579 kb on + strand, within ECD_03438 at 3616.580 kb on - strand, within ECD_03438 at 3616.701 kb on + strand, within ECD_03438 at 3616.702 kb on - strand, within ECD_03438 at 3616.707 kb on + strand, within ECD_03438 at 3616.708 kb on - strand, within ECD_03438 at 3616.731 kb on + strand, within ECD_03438 at 3616.731 kb on + strand, within ECD_03438 at 3616.732 kb on - strand, within ECD_03438 at 3616.734 kb on - strand, within ECD_03438 at 3616.741 kb on + strand, within ECD_03438 at 3616.741 kb on + strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.809 kb on + strand, within ECD_03438 at 3616.858 kb on + strand, within ECD_03438 at 3616.858 kb on + strand, within ECD_03438 at 3616.865 kb on + strand, within ECD_03438 at 3616.866 kb on - strand, within ECD_03438 at 3616.866 kb on - strand, within ECD_03438 at 3616.876 kb on + strand, within ECD_03438 at 3616.876 kb on + strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.940 kb on + strand, within ECD_03438 at 3617.092 kb on - strand, within ECD_03438 at 3617.263 kb on - strand at 3617.327 kb on + strand at 3617.458 kb on - strand at 3617.458 kb on - strand at 3617.466 kb on + strand at 3617.466 kb on + strand at 3617.467 kb on - strand at 3617.467 kb on - strand at 3617.549 kb on + strand at 3617.561 kb on + strand at 3617.585 kb on + strand at 3617.629 kb on - strand, within ECD_03439 at 3617.629 kb on - strand, within ECD_03439 at 3617.640 kb on + strand, within ECD_03439 at 3617.641 kb on - strand, within ECD_03439 at 3617.641 kb on - strand, within ECD_03439 at 3617.671 kb on + strand, within ECD_03439 at 3617.672 kb on - strand, within ECD_03439 at 3617.672 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.746 kb on + strand, within ECD_03439 at 3617.746 kb on + strand, within ECD_03439 at 3617.747 kb on - strand, within ECD_03439 at 3617.747 kb on - strand, within ECD_03439 at 3617.749 kb on + strand, within ECD_03439 at 3617.749 kb on + strand, within ECD_03439 at 3617.750 kb on - strand, within ECD_03439 at 3617.770 kb on + strand, within ECD_03439 at 3617.770 kb on + strand, within ECD_03439 at 3617.771 kb on - strand, within ECD_03439 at 3617.771 kb on - strand, within ECD_03439 at 3617.811 kb on + strand, within ECD_03439 at 3617.812 kb on - strand, within ECD_03439 at 3617.836 kb on - strand, within ECD_03439 at 3617.942 kb on + strand, within ECD_03439 at 3617.945 kb on + strand, within ECD_03439 at 3617.954 kb on + strand, within ECD_03439 at 3617.955 kb on - strand, within ECD_03439 at 3617.975 kb on - strand, within ECD_03439 at 3618.030 kb on - strand, within ECD_03439 at 3618.107 kb on + strand, within ECD_03439 at 3618.420 kb on - strand at 3618.466 kb on + strand at 3618.648 kb on + strand, within ECD_03440 at 3618.651 kb on - strand, within ECD_03440 at 3618.840 kb on + strand, within ECD_03440 at 3618.840 kb on + strand, within ECD_03440 at 3618.879 kb on - strand, within ECD_03440 at 3618.903 kb on + strand, within ECD_03440 at 3619.008 kb on - strand, within ECD_03440 at 3619.069 kb on - strand, within ECD_03440 at 3619.198 kb on - strand, within ECD_03440 at 3619.223 kb on + strand, within ECD_03440 at 3619.223 kb on + strand, within ECD_03440
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,616,579 + ECD_03438 0.59 -0.8 3,616,580 - ECD_03438 0.59 -1.6 3,616,701 + ECD_03438 0.65 -3.9 3,616,702 - ECD_03438 0.65 -1.4 3,616,707 + ECD_03438 0.65 +2.6 3,616,708 - ECD_03438 0.65 -2.8 3,616,731 + ECD_03438 0.66 -0.8 3,616,731 + ECD_03438 0.66 -2.7 3,616,732 - ECD_03438 0.66 +1.2 3,616,734 - ECD_03438 0.67 -1.4 3,616,741 + ECD_03438 0.67 +0.2 3,616,741 + ECD_03438 0.67 +0.3 3,616,742 - ECD_03438 0.67 -2.1 3,616,742 - ECD_03438 0.67 -1.3 3,616,742 - ECD_03438 0.67 -0.5 3,616,742 - ECD_03438 0.67 +0.3 3,616,742 - ECD_03438 0.67 -0.9 3,616,742 - ECD_03438 0.67 -2.4 3,616,742 - ECD_03438 0.67 -1.4 3,616,743 + ECD_03438 0.67 +0.2 3,616,743 + ECD_03438 0.67 -1.1 3,616,743 + ECD_03438 0.67 -0.2 3,616,743 + ECD_03438 0.67 +1.6 3,616,743 + ECD_03438 0.67 +0.5 3,616,744 - ECD_03438 0.67 +0.3 3,616,744 - ECD_03438 0.67 -0.3 3,616,744 - ECD_03438 0.67 -2.2 3,616,744 - ECD_03438 0.67 -0.5 3,616,809 + ECD_03438 0.70 -2.7 3,616,858 + ECD_03438 0.73 -2.1 3,616,858 + ECD_03438 0.73 -0.5 3,616,865 + ECD_03438 0.73 +0.2 3,616,866 - ECD_03438 0.73 -0.6 3,616,866 - ECD_03438 0.73 -1.3 3,616,876 + ECD_03438 0.74 -0.2 3,616,876 + ECD_03438 0.74 +0.1 3,616,877 - ECD_03438 0.74 +1.0 3,616,877 - ECD_03438 0.74 -0.8 3,616,877 - ECD_03438 0.74 +0.3 3,616,877 - ECD_03438 0.74 -0.8 3,616,912 + ECD_03438 0.76 -0.4 3,616,912 + ECD_03438 0.76 -0.3 3,616,912 + ECD_03438 0.76 -3.6 3,616,940 + ECD_03438 0.77 +0.7 3,617,092 - ECD_03438 0.85 -0.1 3,617,263 - -0.0 3,617,327 + -0.8 3,617,458 - -1.7 3,617,458 - +0.9 3,617,466 + +0.3 3,617,466 + -0.0 3,617,467 - -0.9 3,617,467 - -0.8 3,617,549 + +0.5 3,617,561 + -0.6 3,617,585 + -1.2 3,617,629 - ECD_03439 0.15 +0.3 3,617,629 - ECD_03439 0.15 +0.4 3,617,640 + ECD_03439 0.17 +0.6 3,617,641 - ECD_03439 0.17 -2.5 3,617,641 - ECD_03439 0.17 -2.1 3,617,671 + ECD_03439 0.21 -1.8 3,617,672 - ECD_03439 0.21 -2.2 3,617,672 - ECD_03439 0.21 +0.9 3,617,744 - ECD_03439 0.31 -0.5 3,617,744 - ECD_03439 0.31 -0.6 3,617,744 - ECD_03439 0.31 +1.4 3,617,746 + ECD_03439 0.31 -1.4 3,617,746 + ECD_03439 0.31 -2.4 3,617,747 - ECD_03439 0.31 +0.5 3,617,747 - ECD_03439 0.31 -0.4 3,617,749 + ECD_03439 0.31 -2.8 3,617,749 + ECD_03439 0.31 -0.8 3,617,750 - ECD_03439 0.31 +0.7 3,617,770 + ECD_03439 0.34 -3.0 3,617,770 + ECD_03439 0.34 -0.4 3,617,771 - ECD_03439 0.34 +0.2 3,617,771 - ECD_03439 0.34 -1.8 3,617,811 + ECD_03439 0.40 +0.4 3,617,812 - ECD_03439 0.40 -0.1 3,617,836 - ECD_03439 0.43 -1.2 3,617,942 + ECD_03439 0.57 +0.3 3,617,945 + ECD_03439 0.58 -0.1 3,617,954 + ECD_03439 0.59 -0.9 3,617,955 - ECD_03439 0.59 +0.3 3,617,975 - ECD_03439 0.62 -0.5 3,618,030 - ECD_03439 0.69 -2.7 3,618,107 + ECD_03439 0.80 -0.2 3,618,420 - -0.4 3,618,466 + +1.1 3,618,648 + ECD_03440 0.27 -0.0 3,618,651 - ECD_03440 0.28 +0.3 3,618,840 + ECD_03440 0.47 +1.0 3,618,840 + ECD_03440 0.47 -0.5 3,618,879 - ECD_03440 0.51 -1.2 3,618,903 + ECD_03440 0.54 +0.5 3,619,008 - ECD_03440 0.64 -1.8 3,619,069 - ECD_03440 0.71 -2.7 3,619,198 - ECD_03440 0.84 +0.1 3,619,223 + ECD_03440 0.86 +0.3 3,619,223 + ECD_03440 0.86 +0.0
Or see this region's nucleotide sequence