Strain Fitness in Escherichia coli BL21 around ECD_03439

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03438 and ECD_03439 are separated by 120 nucleotidesECD_03439 and ECD_03440 are separated by 123 nucleotides ECD_03438: ECD_03438 - hypothetical protein, at 3,615,417 to 3,617,396 _03438 ECD_03439: ECD_03439 - putative outer membrane protein, at 3,617,517 to 3,618,257 _03439 ECD_03440: ECD_03440 - putative DNA-binding transcriptional regulator, at 3,618,381 to 3,619,355 _03440 Position (kb) 3617 3618 3619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3616.579 kb on + strand, within ECD_03438at 3616.580 kb on - strand, within ECD_03438at 3616.701 kb on + strand, within ECD_03438at 3616.702 kb on - strand, within ECD_03438at 3616.707 kb on + strand, within ECD_03438at 3616.708 kb on - strand, within ECD_03438at 3616.731 kb on + strand, within ECD_03438at 3616.731 kb on + strand, within ECD_03438at 3616.732 kb on - strand, within ECD_03438at 3616.734 kb on - strand, within ECD_03438at 3616.741 kb on + strand, within ECD_03438at 3616.741 kb on + strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.809 kb on + strand, within ECD_03438at 3616.858 kb on + strand, within ECD_03438at 3616.858 kb on + strand, within ECD_03438at 3616.865 kb on + strand, within ECD_03438at 3616.866 kb on - strand, within ECD_03438at 3616.866 kb on - strand, within ECD_03438at 3616.876 kb on + strand, within ECD_03438at 3616.876 kb on + strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.940 kb on + strand, within ECD_03438at 3617.092 kb on - strand, within ECD_03438at 3617.263 kb on - strandat 3617.327 kb on + strandat 3617.458 kb on - strandat 3617.458 kb on - strandat 3617.466 kb on + strandat 3617.466 kb on + strandat 3617.467 kb on - strandat 3617.467 kb on - strandat 3617.549 kb on + strandat 3617.561 kb on + strandat 3617.585 kb on + strandat 3617.629 kb on - strand, within ECD_03439at 3617.629 kb on - strand, within ECD_03439at 3617.640 kb on + strand, within ECD_03439at 3617.641 kb on - strand, within ECD_03439at 3617.641 kb on - strand, within ECD_03439at 3617.671 kb on + strand, within ECD_03439at 3617.672 kb on - strand, within ECD_03439at 3617.672 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.746 kb on + strand, within ECD_03439at 3617.746 kb on + strand, within ECD_03439at 3617.747 kb on - strand, within ECD_03439at 3617.747 kb on - strand, within ECD_03439at 3617.749 kb on + strand, within ECD_03439at 3617.749 kb on + strand, within ECD_03439at 3617.750 kb on - strand, within ECD_03439at 3617.770 kb on + strand, within ECD_03439at 3617.770 kb on + strand, within ECD_03439at 3617.771 kb on - strand, within ECD_03439at 3617.771 kb on - strand, within ECD_03439at 3617.811 kb on + strand, within ECD_03439at 3617.812 kb on - strand, within ECD_03439at 3617.836 kb on - strand, within ECD_03439at 3617.942 kb on + strand, within ECD_03439at 3617.945 kb on + strand, within ECD_03439at 3617.954 kb on + strand, within ECD_03439at 3617.955 kb on - strand, within ECD_03439at 3617.975 kb on - strand, within ECD_03439at 3618.030 kb on - strand, within ECD_03439at 3618.107 kb on + strand, within ECD_03439at 3618.420 kb on - strandat 3618.466 kb on + strandat 3618.648 kb on + strand, within ECD_03440at 3618.651 kb on - strand, within ECD_03440at 3618.840 kb on + strand, within ECD_03440at 3618.840 kb on + strand, within ECD_03440at 3618.879 kb on - strand, within ECD_03440at 3618.903 kb on + strand, within ECD_03440at 3619.008 kb on - strand, within ECD_03440at 3619.069 kb on - strand, within ECD_03440at 3619.198 kb on - strand, within ECD_03440at 3619.223 kb on + strand, within ECD_03440at 3619.223 kb on + strand, within ECD_03440

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,616,579 + ECD_03438 0.59 -0.8
3,616,580 - ECD_03438 0.59 -1.6
3,616,701 + ECD_03438 0.65 -3.9
3,616,702 - ECD_03438 0.65 -1.4
3,616,707 + ECD_03438 0.65 +2.6
3,616,708 - ECD_03438 0.65 -2.8
3,616,731 + ECD_03438 0.66 -0.8
3,616,731 + ECD_03438 0.66 -2.7
3,616,732 - ECD_03438 0.66 +1.2
3,616,734 - ECD_03438 0.67 -1.4
3,616,741 + ECD_03438 0.67 +0.2
3,616,741 + ECD_03438 0.67 +0.3
3,616,742 - ECD_03438 0.67 -2.1
3,616,742 - ECD_03438 0.67 -1.3
3,616,742 - ECD_03438 0.67 -0.5
3,616,742 - ECD_03438 0.67 +0.3
3,616,742 - ECD_03438 0.67 -0.9
3,616,742 - ECD_03438 0.67 -2.4
3,616,742 - ECD_03438 0.67 -1.4
3,616,743 + ECD_03438 0.67 +0.2
3,616,743 + ECD_03438 0.67 -1.1
3,616,743 + ECD_03438 0.67 -0.2
3,616,743 + ECD_03438 0.67 +1.6
3,616,743 + ECD_03438 0.67 +0.5
3,616,744 - ECD_03438 0.67 +0.3
3,616,744 - ECD_03438 0.67 -0.3
3,616,744 - ECD_03438 0.67 -2.2
3,616,744 - ECD_03438 0.67 -0.5
3,616,809 + ECD_03438 0.70 -2.7
3,616,858 + ECD_03438 0.73 -2.1
3,616,858 + ECD_03438 0.73 -0.5
3,616,865 + ECD_03438 0.73 +0.2
3,616,866 - ECD_03438 0.73 -0.6
3,616,866 - ECD_03438 0.73 -1.3
3,616,876 + ECD_03438 0.74 -0.2
3,616,876 + ECD_03438 0.74 +0.1
3,616,877 - ECD_03438 0.74 +1.0
3,616,877 - ECD_03438 0.74 -0.8
3,616,877 - ECD_03438 0.74 +0.3
3,616,877 - ECD_03438 0.74 -0.8
3,616,912 + ECD_03438 0.76 -0.4
3,616,912 + ECD_03438 0.76 -0.3
3,616,912 + ECD_03438 0.76 -3.6
3,616,940 + ECD_03438 0.77 +0.7
3,617,092 - ECD_03438 0.85 -0.1
3,617,263 - -0.0
3,617,327 + -0.8
3,617,458 - -1.7
3,617,458 - +0.9
3,617,466 + +0.3
3,617,466 + -0.0
3,617,467 - -0.9
3,617,467 - -0.8
3,617,549 + +0.5
3,617,561 + -0.6
3,617,585 + -1.2
3,617,629 - ECD_03439 0.15 +0.3
3,617,629 - ECD_03439 0.15 +0.4
3,617,640 + ECD_03439 0.17 +0.6
3,617,641 - ECD_03439 0.17 -2.5
3,617,641 - ECD_03439 0.17 -2.1
3,617,671 + ECD_03439 0.21 -1.8
3,617,672 - ECD_03439 0.21 -2.2
3,617,672 - ECD_03439 0.21 +0.9
3,617,744 - ECD_03439 0.31 -0.5
3,617,744 - ECD_03439 0.31 -0.6
3,617,744 - ECD_03439 0.31 +1.4
3,617,746 + ECD_03439 0.31 -1.4
3,617,746 + ECD_03439 0.31 -2.4
3,617,747 - ECD_03439 0.31 +0.5
3,617,747 - ECD_03439 0.31 -0.4
3,617,749 + ECD_03439 0.31 -2.8
3,617,749 + ECD_03439 0.31 -0.8
3,617,750 - ECD_03439 0.31 +0.7
3,617,770 + ECD_03439 0.34 -3.0
3,617,770 + ECD_03439 0.34 -0.4
3,617,771 - ECD_03439 0.34 +0.2
3,617,771 - ECD_03439 0.34 -1.8
3,617,811 + ECD_03439 0.40 +0.4
3,617,812 - ECD_03439 0.40 -0.1
3,617,836 - ECD_03439 0.43 -1.2
3,617,942 + ECD_03439 0.57 +0.3
3,617,945 + ECD_03439 0.58 -0.1
3,617,954 + ECD_03439 0.59 -0.9
3,617,955 - ECD_03439 0.59 +0.3
3,617,975 - ECD_03439 0.62 -0.5
3,618,030 - ECD_03439 0.69 -2.7
3,618,107 + ECD_03439 0.80 -0.2
3,618,420 - -0.4
3,618,466 + +1.1
3,618,648 + ECD_03440 0.27 -0.0
3,618,651 - ECD_03440 0.28 +0.3
3,618,840 + ECD_03440 0.47 +1.0
3,618,840 + ECD_03440 0.47 -0.5
3,618,879 - ECD_03440 0.51 -1.2
3,618,903 + ECD_03440 0.54 +0.5
3,619,008 - ECD_03440 0.64 -1.8
3,619,069 - ECD_03440 0.71 -2.7
3,619,198 - ECD_03440 0.84 +0.1
3,619,223 + ECD_03440 0.86 +0.3
3,619,223 + ECD_03440 0.86 +0.0

Or see this region's nucleotide sequence