Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03428 and ECD_03429 are separated by 117 nucleotides ECD_03429 and ECD_03430 are separated by 2 nucleotides ECD_03430 and ECD_03431 are separated by 12 nucleotides
ECD_03428: ECD_03428 - DUF386 family protein, at 3,605,895 to 3,606,362
_03428
ECD_03429: ECD_03429 - 2,3-diketo-L-gulonate TRAP transporter small permease protein, at 3,606,480 to 3,606,953
_03429
ECD_03430: ECD_03430 - 2,3-diketo-L-gulonate TRAP transporter large permease protein, at 3,606,956 to 3,608,233
_03430
ECD_03431: ECD_03431 - 2,3-diketo-L-gulonate-binding periplasmic protein, at 3,608,246 to 3,609,232
_03431
Position (kb)
3606
3607
3608
3609 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3606.335 kb on + strand at 3606.463 kb on - strand at 3606.607 kb on - strand, within ECD_03429 at 3606.650 kb on + strand, within ECD_03429 at 3606.740 kb on - strand, within ECD_03429 at 3606.746 kb on - strand, within ECD_03429 at 3606.749 kb on + strand, within ECD_03429 at 3606.749 kb on + strand, within ECD_03429 at 3606.749 kb on + strand, within ECD_03429 at 3606.826 kb on + strand, within ECD_03429 at 3606.843 kb on + strand, within ECD_03429 at 3606.843 kb on + strand, within ECD_03429 at 3606.898 kb on + strand, within ECD_03429 at 3606.899 kb on - strand, within ECD_03429 at 3606.901 kb on - strand, within ECD_03429 at 3606.929 kb on - strand at 3606.951 kb on + strand at 3606.952 kb on - strand at 3606.952 kb on - strand at 3606.994 kb on + strand at 3606.994 kb on + strand at 3606.995 kb on - strand at 3607.258 kb on + strand, within ECD_03430 at 3607.258 kb on + strand, within ECD_03430 at 3607.259 kb on - strand, within ECD_03430 at 3607.259 kb on - strand, within ECD_03430 at 3607.259 kb on - strand, within ECD_03430 at 3607.347 kb on - strand, within ECD_03430 at 3607.402 kb on + strand, within ECD_03430 at 3607.423 kb on + strand, within ECD_03430 at 3607.427 kb on - strand, within ECD_03430 at 3607.459 kb on + strand, within ECD_03430 at 3607.459 kb on + strand, within ECD_03430 at 3607.460 kb on - strand, within ECD_03430 at 3607.516 kb on + strand, within ECD_03430 at 3607.516 kb on + strand, within ECD_03430 at 3607.517 kb on - strand, within ECD_03430 at 3607.549 kb on - strand, within ECD_03430 at 3607.694 kb on + strand, within ECD_03430 at 3607.717 kb on + strand, within ECD_03430 at 3607.718 kb on - strand, within ECD_03430 at 3607.718 kb on - strand, within ECD_03430 at 3607.718 kb on - strand, within ECD_03430 at 3607.755 kb on + strand, within ECD_03430 at 3607.755 kb on + strand, within ECD_03430 at 3607.756 kb on - strand, within ECD_03430 at 3607.756 kb on - strand, within ECD_03430 at 3607.912 kb on + strand, within ECD_03430 at 3607.913 kb on - strand, within ECD_03430 at 3607.913 kb on - strand, within ECD_03430 at 3607.966 kb on - strand, within ECD_03430 at 3607.966 kb on - strand, within ECD_03430 at 3608.065 kb on + strand, within ECD_03430 at 3608.481 kb on + strand, within ECD_03431 at 3608.481 kb on + strand, within ECD_03431 at 3608.482 kb on - strand, within ECD_03431 at 3608.661 kb on + strand, within ECD_03431 at 3608.717 kb on - strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.832 kb on - strand, within ECD_03431 at 3608.942 kb on + strand, within ECD_03431 at 3608.988 kb on + strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3609.037 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.042 kb on - strand, within ECD_03431 at 3609.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,606,335 + -3.2 3,606,463 - -2.3 3,606,607 - ECD_03429 0.27 +1.1 3,606,650 + ECD_03429 0.36 +0.7 3,606,740 - ECD_03429 0.55 -0.9 3,606,746 - ECD_03429 0.56 -0.6 3,606,749 + ECD_03429 0.57 +0.2 3,606,749 + ECD_03429 0.57 -1.1 3,606,749 + ECD_03429 0.57 +0.2 3,606,826 + ECD_03429 0.73 +0.6 3,606,843 + ECD_03429 0.77 +0.0 3,606,843 + ECD_03429 0.77 +0.2 3,606,898 + ECD_03429 0.88 -1.8 3,606,899 - ECD_03429 0.88 -0.5 3,606,901 - ECD_03429 0.89 -2.3 3,606,929 - +0.4 3,606,951 + +0.0 3,606,952 - -0.6 3,606,952 - +0.9 3,606,994 + -2.1 3,606,994 + -0.8 3,606,995 - +0.6 3,607,258 + ECD_03430 0.24 -0.7 3,607,258 + ECD_03430 0.24 +0.2 3,607,259 - ECD_03430 0.24 -0.1 3,607,259 - ECD_03430 0.24 -1.5 3,607,259 - ECD_03430 0.24 +1.5 3,607,347 - ECD_03430 0.31 -0.7 3,607,402 + ECD_03430 0.35 -2.0 3,607,423 + ECD_03430 0.37 -1.1 3,607,427 - ECD_03430 0.37 +0.1 3,607,459 + ECD_03430 0.39 -3.1 3,607,459 + ECD_03430 0.39 -1.6 3,607,460 - ECD_03430 0.39 -1.0 3,607,516 + ECD_03430 0.44 -0.3 3,607,516 + ECD_03430 0.44 +0.5 3,607,517 - ECD_03430 0.44 -0.2 3,607,549 - ECD_03430 0.46 +1.4 3,607,694 + ECD_03430 0.58 +0.4 3,607,717 + ECD_03430 0.60 -1.0 3,607,718 - ECD_03430 0.60 -1.0 3,607,718 - ECD_03430 0.60 -1.4 3,607,718 - ECD_03430 0.60 +2.1 3,607,755 + ECD_03430 0.63 -0.3 3,607,755 + ECD_03430 0.63 -0.5 3,607,756 - ECD_03430 0.63 -0.6 3,607,756 - ECD_03430 0.63 +0.2 3,607,912 + ECD_03430 0.75 -0.9 3,607,913 - ECD_03430 0.75 -1.3 3,607,913 - ECD_03430 0.75 -1.6 3,607,966 - ECD_03430 0.79 -1.7 3,607,966 - ECD_03430 0.79 +0.9 3,608,065 + ECD_03430 0.87 -0.3 3,608,481 + ECD_03431 0.24 +1.7 3,608,481 + ECD_03431 0.24 -0.1 3,608,482 - ECD_03431 0.24 -0.4 3,608,661 + ECD_03431 0.42 +0.4 3,608,717 - ECD_03431 0.48 +0.8 3,608,831 + ECD_03431 0.59 +0.1 3,608,831 + ECD_03431 0.59 -1.2 3,608,832 - ECD_03431 0.59 +0.8 3,608,942 + ECD_03431 0.71 +1.0 3,608,988 + ECD_03431 0.75 -0.5 3,608,989 - ECD_03431 0.75 -3.0 3,608,989 - ECD_03431 0.75 -0.3 3,608,989 - ECD_03431 0.75 +1.4 3,608,989 - ECD_03431 0.75 -1.0 3,609,037 + ECD_03431 0.80 +1.3 3,609,041 + ECD_03431 0.81 -3.1 3,609,041 + ECD_03431 0.81 -0.1 3,609,041 + ECD_03431 0.81 +0.1 3,609,041 + ECD_03431 0.81 +1.0 3,609,042 - ECD_03431 0.81 -0.7 3,609,230 + +0.4
Or see this region's nucleotide sequence