Strain Fitness in Escherichia coli BL21 around ECD_03430

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03428 and ECD_03429 are separated by 117 nucleotidesECD_03429 and ECD_03430 are separated by 2 nucleotidesECD_03430 and ECD_03431 are separated by 12 nucleotides ECD_03428: ECD_03428 - DUF386 family protein, at 3,605,895 to 3,606,362 _03428 ECD_03429: ECD_03429 - 2,3-diketo-L-gulonate TRAP transporter small permease protein, at 3,606,480 to 3,606,953 _03429 ECD_03430: ECD_03430 - 2,3-diketo-L-gulonate TRAP transporter large permease protein, at 3,606,956 to 3,608,233 _03430 ECD_03431: ECD_03431 - 2,3-diketo-L-gulonate-binding periplasmic protein, at 3,608,246 to 3,609,232 _03431 Position (kb) 3606 3607 3608 3609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3606.335 kb on + strandat 3606.463 kb on - strandat 3606.607 kb on - strand, within ECD_03429at 3606.650 kb on + strand, within ECD_03429at 3606.740 kb on - strand, within ECD_03429at 3606.746 kb on - strand, within ECD_03429at 3606.749 kb on + strand, within ECD_03429at 3606.749 kb on + strand, within ECD_03429at 3606.749 kb on + strand, within ECD_03429at 3606.826 kb on + strand, within ECD_03429at 3606.843 kb on + strand, within ECD_03429at 3606.843 kb on + strand, within ECD_03429at 3606.898 kb on + strand, within ECD_03429at 3606.899 kb on - strand, within ECD_03429at 3606.901 kb on - strand, within ECD_03429at 3606.929 kb on - strandat 3606.951 kb on + strandat 3606.952 kb on - strandat 3606.952 kb on - strandat 3606.994 kb on + strandat 3606.994 kb on + strandat 3606.995 kb on - strandat 3607.258 kb on + strand, within ECD_03430at 3607.258 kb on + strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.347 kb on - strand, within ECD_03430at 3607.402 kb on + strand, within ECD_03430at 3607.423 kb on + strand, within ECD_03430at 3607.427 kb on - strand, within ECD_03430at 3607.459 kb on + strand, within ECD_03430at 3607.459 kb on + strand, within ECD_03430at 3607.460 kb on - strand, within ECD_03430at 3607.516 kb on + strand, within ECD_03430at 3607.516 kb on + strand, within ECD_03430at 3607.517 kb on - strand, within ECD_03430at 3607.549 kb on - strand, within ECD_03430at 3607.694 kb on + strand, within ECD_03430at 3607.717 kb on + strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.755 kb on + strand, within ECD_03430at 3607.755 kb on + strand, within ECD_03430at 3607.756 kb on - strand, within ECD_03430at 3607.756 kb on - strand, within ECD_03430at 3607.912 kb on + strand, within ECD_03430at 3607.913 kb on - strand, within ECD_03430at 3607.913 kb on - strand, within ECD_03430at 3607.966 kb on - strand, within ECD_03430at 3607.966 kb on - strand, within ECD_03430at 3608.065 kb on + strand, within ECD_03430at 3608.481 kb on + strand, within ECD_03431at 3608.481 kb on + strand, within ECD_03431at 3608.482 kb on - strand, within ECD_03431at 3608.661 kb on + strand, within ECD_03431at 3608.717 kb on - strand, within ECD_03431at 3608.831 kb on + strand, within ECD_03431at 3608.831 kb on + strand, within ECD_03431at 3608.832 kb on - strand, within ECD_03431at 3608.942 kb on + strand, within ECD_03431at 3608.988 kb on + strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3609.037 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.042 kb on - strand, within ECD_03431at 3609.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,606,335 + -3.2
3,606,463 - -2.3
3,606,607 - ECD_03429 0.27 +1.1
3,606,650 + ECD_03429 0.36 +0.7
3,606,740 - ECD_03429 0.55 -0.9
3,606,746 - ECD_03429 0.56 -0.6
3,606,749 + ECD_03429 0.57 +0.2
3,606,749 + ECD_03429 0.57 -1.1
3,606,749 + ECD_03429 0.57 +0.2
3,606,826 + ECD_03429 0.73 +0.6
3,606,843 + ECD_03429 0.77 +0.0
3,606,843 + ECD_03429 0.77 +0.2
3,606,898 + ECD_03429 0.88 -1.8
3,606,899 - ECD_03429 0.88 -0.5
3,606,901 - ECD_03429 0.89 -2.3
3,606,929 - +0.4
3,606,951 + +0.0
3,606,952 - -0.6
3,606,952 - +0.9
3,606,994 + -2.1
3,606,994 + -0.8
3,606,995 - +0.6
3,607,258 + ECD_03430 0.24 -0.7
3,607,258 + ECD_03430 0.24 +0.2
3,607,259 - ECD_03430 0.24 -0.1
3,607,259 - ECD_03430 0.24 -1.5
3,607,259 - ECD_03430 0.24 +1.5
3,607,347 - ECD_03430 0.31 -0.7
3,607,402 + ECD_03430 0.35 -2.0
3,607,423 + ECD_03430 0.37 -1.1
3,607,427 - ECD_03430 0.37 +0.1
3,607,459 + ECD_03430 0.39 -3.1
3,607,459 + ECD_03430 0.39 -1.6
3,607,460 - ECD_03430 0.39 -1.0
3,607,516 + ECD_03430 0.44 -0.3
3,607,516 + ECD_03430 0.44 +0.5
3,607,517 - ECD_03430 0.44 -0.2
3,607,549 - ECD_03430 0.46 +1.4
3,607,694 + ECD_03430 0.58 +0.4
3,607,717 + ECD_03430 0.60 -1.0
3,607,718 - ECD_03430 0.60 -1.0
3,607,718 - ECD_03430 0.60 -1.4
3,607,718 - ECD_03430 0.60 +2.1
3,607,755 + ECD_03430 0.63 -0.3
3,607,755 + ECD_03430 0.63 -0.5
3,607,756 - ECD_03430 0.63 -0.6
3,607,756 - ECD_03430 0.63 +0.2
3,607,912 + ECD_03430 0.75 -0.9
3,607,913 - ECD_03430 0.75 -1.3
3,607,913 - ECD_03430 0.75 -1.6
3,607,966 - ECD_03430 0.79 -1.7
3,607,966 - ECD_03430 0.79 +0.9
3,608,065 + ECD_03430 0.87 -0.3
3,608,481 + ECD_03431 0.24 +1.7
3,608,481 + ECD_03431 0.24 -0.1
3,608,482 - ECD_03431 0.24 -0.4
3,608,661 + ECD_03431 0.42 +0.4
3,608,717 - ECD_03431 0.48 +0.8
3,608,831 + ECD_03431 0.59 +0.1
3,608,831 + ECD_03431 0.59 -1.2
3,608,832 - ECD_03431 0.59 +0.8
3,608,942 + ECD_03431 0.71 +1.0
3,608,988 + ECD_03431 0.75 -0.5
3,608,989 - ECD_03431 0.75 -3.0
3,608,989 - ECD_03431 0.75 -0.3
3,608,989 - ECD_03431 0.75 +1.4
3,608,989 - ECD_03431 0.75 -1.0
3,609,037 + ECD_03431 0.80 +1.3
3,609,041 + ECD_03431 0.81 -3.1
3,609,041 + ECD_03431 0.81 -0.1
3,609,041 + ECD_03431 0.81 +0.1
3,609,041 + ECD_03431 0.81 +1.0
3,609,042 - ECD_03431 0.81 -0.7
3,609,230 + +0.4

Or see this region's nucleotide sequence