Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03379 and ECD_03380 are separated by 6 nucleotides ECD_03380 and ECD_03381 are separated by 10 nucleotides
ECD_03379: ECD_03379 - endo-1,4-D-glucanase, at 3,550,343 to 3,551,449
_03379
ECD_03380: ECD_03380 - regulator of cellulose synthase, cyclic di-GMP binding, at 3,551,456 to 3,553,795
_03380
ECD_03381: ECD_03381 - cellulose synthase, catalytic subunit, at 3,553,806 to 3,556,424
_03381
Position (kb)
3551
3552
3553
3554 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3550.456 kb on - strand, within ECD_03379 at 3550.456 kb on - strand, within ECD_03379 at 3550.456 kb on - strand, within ECD_03379 at 3550.458 kb on + strand, within ECD_03379 at 3550.458 kb on + strand, within ECD_03379 at 3550.458 kb on + strand, within ECD_03379 at 3550.459 kb on - strand, within ECD_03379 at 3550.707 kb on + strand, within ECD_03379 at 3550.708 kb on - strand, within ECD_03379 at 3550.708 kb on - strand, within ECD_03379 at 3550.725 kb on + strand, within ECD_03379 at 3550.754 kb on + strand, within ECD_03379 at 3550.852 kb on + strand, within ECD_03379 at 3550.852 kb on + strand, within ECD_03379 at 3551.038 kb on + strand, within ECD_03379 at 3551.039 kb on - strand, within ECD_03379 at 3551.137 kb on + strand, within ECD_03379 at 3551.137 kb on + strand, within ECD_03379 at 3551.137 kb on + strand, within ECD_03379 at 3551.137 kb on + strand, within ECD_03379 at 3551.138 kb on - strand, within ECD_03379 at 3551.138 kb on - strand, within ECD_03379 at 3551.184 kb on - strand, within ECD_03379 at 3551.224 kb on + strand, within ECD_03379 at 3551.225 kb on - strand, within ECD_03379 at 3551.269 kb on + strand, within ECD_03379 at 3551.269 kb on + strand, within ECD_03379 at 3551.269 kb on + strand, within ECD_03379 at 3551.269 kb on + strand, within ECD_03379 at 3551.270 kb on - strand, within ECD_03379 at 3551.270 kb on - strand, within ECD_03379 at 3551.270 kb on - strand, within ECD_03379 at 3551.270 kb on - strand, within ECD_03379 at 3551.270 kb on - strand, within ECD_03379 at 3551.346 kb on + strand at 3551.347 kb on - strand at 3551.357 kb on - strand at 3551.435 kb on - strand at 3551.457 kb on + strand at 3551.457 kb on + strand at 3551.458 kb on - strand at 3551.458 kb on - strand at 3551.492 kb on - strand at 3551.513 kb on + strand at 3551.513 kb on + strand at 3551.529 kb on - strand at 3551.584 kb on - strand at 3551.615 kb on + strand at 3551.615 kb on + strand at 3551.615 kb on + strand at 3551.615 kb on + strand at 3551.615 kb on + strand at 3551.616 kb on - strand at 3551.616 kb on - strand at 3551.616 kb on - strand at 3551.616 kb on - strand at 3551.619 kb on + strand at 3551.619 kb on + strand at 3551.619 kb on + strand at 3551.620 kb on - strand at 3551.620 kb on - strand at 3551.639 kb on + strand at 3551.639 kb on + strand at 3551.639 kb on + strand at 3551.639 kb on + strand at 3551.640 kb on - strand at 3551.746 kb on + strand, within ECD_03380 at 3551.747 kb on - strand, within ECD_03380 at 3551.785 kb on - strand, within ECD_03380 at 3551.874 kb on - strand, within ECD_03380 at 3551.939 kb on + strand, within ECD_03380 at 3551.940 kb on - strand, within ECD_03380 at 3551.940 kb on - strand, within ECD_03380 at 3551.940 kb on - strand, within ECD_03380 at 3551.954 kb on - strand, within ECD_03380 at 3552.047 kb on - strand, within ECD_03380 at 3552.047 kb on - strand, within ECD_03380 at 3552.088 kb on + strand, within ECD_03380 at 3552.088 kb on + strand, within ECD_03380 at 3552.088 kb on + strand, within ECD_03380 at 3552.088 kb on + strand, within ECD_03380 at 3552.088 kb on + strand, within ECD_03380 at 3552.089 kb on - strand, within ECD_03380 at 3552.187 kb on + strand, within ECD_03380 at 3552.200 kb on + strand, within ECD_03380 at 3552.225 kb on + strand, within ECD_03380 at 3552.226 kb on - strand, within ECD_03380 at 3552.226 kb on - strand, within ECD_03380 at 3552.228 kb on + strand, within ECD_03380 at 3552.229 kb on - strand, within ECD_03380 at 3552.229 kb on - strand, within ECD_03380 at 3552.229 kb on - strand, within ECD_03380 at 3552.292 kb on + strand, within ECD_03380 at 3552.292 kb on + strand, within ECD_03380 at 3552.292 kb on + strand, within ECD_03380 at 3552.293 kb on - strand, within ECD_03380 at 3552.295 kb on + strand, within ECD_03380 at 3552.296 kb on - strand, within ECD_03380 at 3552.301 kb on + strand, within ECD_03380 at 3552.302 kb on - strand, within ECD_03380 at 3552.302 kb on - strand, within ECD_03380 at 3552.302 kb on - strand, within ECD_03380 at 3552.302 kb on - strand, within ECD_03380 at 3552.331 kb on + strand, within ECD_03380 at 3552.332 kb on - strand, within ECD_03380 at 3552.332 kb on - strand, within ECD_03380 at 3552.333 kb on + strand, within ECD_03380 at 3552.334 kb on - strand, within ECD_03380 at 3552.385 kb on + strand, within ECD_03380 at 3552.386 kb on - strand, within ECD_03380 at 3552.419 kb on + strand, within ECD_03380 at 3552.419 kb on + strand, within ECD_03380 at 3552.419 kb on + strand, within ECD_03380 at 3552.420 kb on - strand, within ECD_03380 at 3552.543 kb on + strand, within ECD_03380 at 3552.543 kb on + strand, within ECD_03380 at 3552.549 kb on + strand, within ECD_03380 at 3552.550 kb on - strand, within ECD_03380 at 3552.562 kb on + strand, within ECD_03380 at 3552.562 kb on + strand, within ECD_03380 at 3552.574 kb on + strand, within ECD_03380 at 3552.650 kb on + strand, within ECD_03380 at 3552.650 kb on + strand, within ECD_03380 at 3552.651 kb on - strand, within ECD_03380 at 3552.651 kb on - strand, within ECD_03380 at 3552.663 kb on + strand, within ECD_03380 at 3552.700 kb on + strand, within ECD_03380 at 3552.701 kb on - strand, within ECD_03380 at 3552.701 kb on - strand, within ECD_03380 at 3552.705 kb on - strand, within ECD_03380 at 3552.864 kb on + strand, within ECD_03380 at 3552.865 kb on - strand, within ECD_03380 at 3552.884 kb on - strand, within ECD_03380 at 3552.970 kb on + strand, within ECD_03380 at 3552.971 kb on - strand, within ECD_03380 at 3552.990 kb on + strand, within ECD_03380 at 3552.990 kb on + strand, within ECD_03380 at 3552.990 kb on + strand, within ECD_03380 at 3553.111 kb on + strand, within ECD_03380 at 3553.111 kb on + strand, within ECD_03380 at 3553.112 kb on - strand, within ECD_03380 at 3553.114 kb on + strand, within ECD_03380 at 3553.114 kb on + strand, within ECD_03380 at 3553.115 kb on - strand, within ECD_03380 at 3553.185 kb on + strand, within ECD_03380 at 3553.186 kb on - strand, within ECD_03380 at 3553.304 kb on - strand, within ECD_03380 at 3553.307 kb on - strand, within ECD_03380 at 3553.319 kb on - strand, within ECD_03380 at 3553.447 kb on - strand, within ECD_03380 at 3553.529 kb on + strand, within ECD_03380 at 3553.529 kb on + strand, within ECD_03380 at 3553.530 kb on - strand, within ECD_03380 at 3553.782 kb on - strand at 3553.782 kb on - strand at 3553.802 kb on - strand at 3553.802 kb on - strand at 3553.878 kb on + strand at 3553.878 kb on + strand at 3553.879 kb on - strand at 3553.879 kb on - strand at 3553.915 kb on - strand at 3554.007 kb on - strand at 3554.043 kb on - strand at 3554.061 kb on - strand at 3554.061 kb on - strand at 3554.061 kb on - strand at 3554.061 kb on - strand at 3554.158 kb on + strand, within ECD_03381 at 3554.341 kb on - strand, within ECD_03381 at 3554.341 kb on - strand, within ECD_03381 at 3554.341 kb on - strand, within ECD_03381 at 3554.395 kb on + strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.396 kb on - strand, within ECD_03381 at 3554.401 kb on - strand, within ECD_03381 at 3554.449 kb on + strand, within ECD_03381 at 3554.449 kb on + strand, within ECD_03381 at 3554.450 kb on - strand, within ECD_03381 at 3554.450 kb on - strand, within ECD_03381 at 3554.450 kb on - strand, within ECD_03381 at 3554.509 kb on + strand, within ECD_03381 at 3554.510 kb on - strand, within ECD_03381 at 3554.537 kb on - strand, within ECD_03381 at 3554.573 kb on + strand, within ECD_03381 at 3554.626 kb on + strand, within ECD_03381 at 3554.626 kb on + strand, within ECD_03381 at 3554.675 kb on - strand, within ECD_03381 at 3554.717 kb on + strand, within ECD_03381 at 3554.718 kb on - strand, within ECD_03381 at 3554.718 kb on - strand, within ECD_03381 at 3554.758 kb on + strand, within ECD_03381 at 3554.758 kb on + strand, within ECD_03381 at 3554.758 kb on + strand, within ECD_03381 at 3554.759 kb on - strand, within ECD_03381 at 3554.767 kb on + strand, within ECD_03381
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,550,456 - ECD_03379 0.10 -0.2 3,550,456 - ECD_03379 0.10 -0.5 3,550,456 - ECD_03379 0.10 +0.6 3,550,458 + ECD_03379 0.10 +1.5 3,550,458 + ECD_03379 0.10 +0.7 3,550,458 + ECD_03379 0.10 +1.0 3,550,459 - ECD_03379 0.10 +0.8 3,550,707 + ECD_03379 0.33 +0.6 3,550,708 - ECD_03379 0.33 -1.8 3,550,708 - ECD_03379 0.33 +0.6 3,550,725 + ECD_03379 0.35 -2.1 3,550,754 + ECD_03379 0.37 -2.4 3,550,852 + ECD_03379 0.46 -0.5 3,550,852 + ECD_03379 0.46 +0.1 3,551,038 + ECD_03379 0.63 -1.7 3,551,039 - ECD_03379 0.63 +0.3 3,551,137 + ECD_03379 0.72 -0.5 3,551,137 + ECD_03379 0.72 +0.8 3,551,137 + ECD_03379 0.72 -0.3 3,551,137 + ECD_03379 0.72 -1.6 3,551,138 - ECD_03379 0.72 +0.7 3,551,138 - ECD_03379 0.72 -0.5 3,551,184 - ECD_03379 0.76 -0.1 3,551,224 + ECD_03379 0.80 +0.4 3,551,225 - ECD_03379 0.80 +0.3 3,551,269 + ECD_03379 0.84 -1.8 3,551,269 + ECD_03379 0.84 +0.9 3,551,269 + ECD_03379 0.84 +0.1 3,551,269 + ECD_03379 0.84 +0.6 3,551,270 - ECD_03379 0.84 +1.0 3,551,270 - ECD_03379 0.84 +0.4 3,551,270 - ECD_03379 0.84 -0.6 3,551,270 - ECD_03379 0.84 -0.8 3,551,270 - ECD_03379 0.84 +0.6 3,551,346 + +1.1 3,551,347 - -0.8 3,551,357 - -0.9 3,551,435 - +1.2 3,551,457 + +1.4 3,551,457 + -0.6 3,551,458 - -2.0 3,551,458 - +0.8 3,551,492 - -2.3 3,551,513 + +0.1 3,551,513 + +1.6 3,551,529 - +0.2 3,551,584 - +0.5 3,551,615 + -0.6 3,551,615 + -0.2 3,551,615 + +1.1 3,551,615 + +0.8 3,551,615 + +0.1 3,551,616 - +0.4 3,551,616 - -0.6 3,551,616 - +1.1 3,551,616 - +0.4 3,551,619 + -1.5 3,551,619 + +1.4 3,551,619 + -1.2 3,551,620 - -0.3 3,551,620 - -0.3 3,551,639 + -0.0 3,551,639 + -0.8 3,551,639 + -0.8 3,551,639 + -0.1 3,551,640 - +0.6 3,551,746 + ECD_03380 0.12 +2.5 3,551,747 - ECD_03380 0.12 -1.2 3,551,785 - ECD_03380 0.14 +2.4 3,551,874 - ECD_03380 0.18 +0.0 3,551,939 + ECD_03380 0.21 +0.6 3,551,940 - ECD_03380 0.21 -0.0 3,551,940 - ECD_03380 0.21 +1.6 3,551,940 - ECD_03380 0.21 +1.3 3,551,954 - ECD_03380 0.21 +0.1 3,552,047 - ECD_03380 0.25 -0.3 3,552,047 - ECD_03380 0.25 -1.6 3,552,088 + ECD_03380 0.27 -0.9 3,552,088 + ECD_03380 0.27 -0.8 3,552,088 + ECD_03380 0.27 +0.7 3,552,088 + ECD_03380 0.27 -1.6 3,552,088 + ECD_03380 0.27 -1.8 3,552,089 - ECD_03380 0.27 +0.5 3,552,187 + ECD_03380 0.31 -0.3 3,552,200 + ECD_03380 0.32 +0.4 3,552,225 + ECD_03380 0.33 -0.5 3,552,226 - ECD_03380 0.33 +0.1 3,552,226 - ECD_03380 0.33 +0.5 3,552,228 + ECD_03380 0.33 -0.1 3,552,229 - ECD_03380 0.33 +0.8 3,552,229 - ECD_03380 0.33 +0.1 3,552,229 - ECD_03380 0.33 -0.1 3,552,292 + ECD_03380 0.36 +0.9 3,552,292 + ECD_03380 0.36 -3.0 3,552,292 + ECD_03380 0.36 +0.4 3,552,293 - ECD_03380 0.36 +0.6 3,552,295 + ECD_03380 0.36 +1.5 3,552,296 - ECD_03380 0.36 -0.1 3,552,301 + ECD_03380 0.36 +0.0 3,552,302 - ECD_03380 0.36 -0.4 3,552,302 - ECD_03380 0.36 -1.9 3,552,302 - ECD_03380 0.36 -0.2 3,552,302 - ECD_03380 0.36 +0.5 3,552,331 + ECD_03380 0.37 +0.7 3,552,332 - ECD_03380 0.37 -0.1 3,552,332 - ECD_03380 0.37 +0.6 3,552,333 + ECD_03380 0.37 -0.1 3,552,334 - ECD_03380 0.38 -3.2 3,552,385 + ECD_03380 0.40 +0.8 3,552,386 - ECD_03380 0.40 +0.3 3,552,419 + ECD_03380 0.41 +0.2 3,552,419 + ECD_03380 0.41 +0.5 3,552,419 + ECD_03380 0.41 -0.6 3,552,420 - ECD_03380 0.41 -0.0 3,552,543 + ECD_03380 0.46 +0.1 3,552,543 + ECD_03380 0.46 -1.7 3,552,549 + ECD_03380 0.47 -0.4 3,552,550 - ECD_03380 0.47 +0.1 3,552,562 + ECD_03380 0.47 -1.2 3,552,562 + ECD_03380 0.47 -2.2 3,552,574 + ECD_03380 0.48 +0.5 3,552,650 + ECD_03380 0.51 -0.0 3,552,650 + ECD_03380 0.51 +0.0 3,552,651 - ECD_03380 0.51 +1.8 3,552,651 - ECD_03380 0.51 +0.2 3,552,663 + ECD_03380 0.52 +0.3 3,552,700 + ECD_03380 0.53 -1.0 3,552,701 - ECD_03380 0.53 -1.0 3,552,701 - ECD_03380 0.53 -0.2 3,552,705 - ECD_03380 0.53 +1.6 3,552,864 + ECD_03380 0.60 +1.2 3,552,865 - ECD_03380 0.60 +0.3 3,552,884 - ECD_03380 0.61 -0.2 3,552,970 + ECD_03380 0.65 -0.7 3,552,971 - ECD_03380 0.65 -1.2 3,552,990 + ECD_03380 0.66 +1.6 3,552,990 + ECD_03380 0.66 -2.6 3,552,990 + ECD_03380 0.66 -0.4 3,553,111 + ECD_03380 0.71 -1.9 3,553,111 + ECD_03380 0.71 +0.2 3,553,112 - ECD_03380 0.71 -2.1 3,553,114 + ECD_03380 0.71 +0.6 3,553,114 + ECD_03380 0.71 -1.4 3,553,115 - ECD_03380 0.71 -1.1 3,553,185 + ECD_03380 0.74 -0.2 3,553,186 - ECD_03380 0.74 +0.4 3,553,304 - ECD_03380 0.79 -0.7 3,553,307 - ECD_03380 0.79 -0.3 3,553,319 - ECD_03380 0.80 -1.4 3,553,447 - ECD_03380 0.85 +0.7 3,553,529 + ECD_03380 0.89 -2.7 3,553,529 + ECD_03380 0.89 +0.2 3,553,530 - ECD_03380 0.89 -0.4 3,553,782 - +0.1 3,553,782 - +1.1 3,553,802 - +1.0 3,553,802 - +1.5 3,553,878 + -0.3 3,553,878 + +1.6 3,553,879 - -0.8 3,553,879 - +0.4 3,553,915 - -0.8 3,554,007 - -2.4 3,554,043 - -0.1 3,554,061 - -3.4 3,554,061 - +0.2 3,554,061 - +2.9 3,554,061 - +0.3 3,554,158 + ECD_03381 0.13 +1.3 3,554,341 - ECD_03381 0.20 +0.9 3,554,341 - ECD_03381 0.20 +0.8 3,554,341 - ECD_03381 0.20 -2.2 3,554,395 + ECD_03381 0.22 +0.3 3,554,396 - ECD_03381 0.23 -2.1 3,554,396 - ECD_03381 0.23 +0.9 3,554,396 - ECD_03381 0.23 -0.5 3,554,396 - ECD_03381 0.23 +0.4 3,554,396 - ECD_03381 0.23 +0.2 3,554,396 - ECD_03381 0.23 +0.9 3,554,401 - ECD_03381 0.23 +0.3 3,554,449 + ECD_03381 0.25 -0.4 3,554,449 + ECD_03381 0.25 +0.2 3,554,450 - ECD_03381 0.25 -0.8 3,554,450 - ECD_03381 0.25 +1.3 3,554,450 - ECD_03381 0.25 +1.4 3,554,509 + ECD_03381 0.27 -0.9 3,554,510 - ECD_03381 0.27 +1.5 3,554,537 - ECD_03381 0.28 +0.1 3,554,573 + ECD_03381 0.29 +0.2 3,554,626 + ECD_03381 0.31 -1.4 3,554,626 + ECD_03381 0.31 -2.8 3,554,675 - ECD_03381 0.33 +0.9 3,554,717 + ECD_03381 0.35 -0.8 3,554,718 - ECD_03381 0.35 -2.4 3,554,718 - ECD_03381 0.35 +0.2 3,554,758 + ECD_03381 0.36 -3.1 3,554,758 + ECD_03381 0.36 -1.2 3,554,758 + ECD_03381 0.36 +1.0 3,554,759 - ECD_03381 0.36 +0.3 3,554,767 + ECD_03381 0.37 -1.4
Or see this region's nucleotide sequence