Strain Fitness in Escherichia coli BL21 around ECD_03380

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03379 and ECD_03380 are separated by 6 nucleotidesECD_03380 and ECD_03381 are separated by 10 nucleotides ECD_03379: ECD_03379 - endo-1,4-D-glucanase, at 3,550,343 to 3,551,449 _03379 ECD_03380: ECD_03380 - regulator of cellulose synthase, cyclic di-GMP binding, at 3,551,456 to 3,553,795 _03380 ECD_03381: ECD_03381 - cellulose synthase, catalytic subunit, at 3,553,806 to 3,556,424 _03381 Position (kb) 3551 3552 3553 3554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3550.456 kb on - strand, within ECD_03379at 3550.456 kb on - strand, within ECD_03379at 3550.456 kb on - strand, within ECD_03379at 3550.458 kb on + strand, within ECD_03379at 3550.458 kb on + strand, within ECD_03379at 3550.458 kb on + strand, within ECD_03379at 3550.459 kb on - strand, within ECD_03379at 3550.707 kb on + strand, within ECD_03379at 3550.708 kb on - strand, within ECD_03379at 3550.708 kb on - strand, within ECD_03379at 3550.725 kb on + strand, within ECD_03379at 3550.754 kb on + strand, within ECD_03379at 3550.852 kb on + strand, within ECD_03379at 3550.852 kb on + strand, within ECD_03379at 3551.038 kb on + strand, within ECD_03379at 3551.039 kb on - strand, within ECD_03379at 3551.137 kb on + strand, within ECD_03379at 3551.137 kb on + strand, within ECD_03379at 3551.137 kb on + strand, within ECD_03379at 3551.137 kb on + strand, within ECD_03379at 3551.138 kb on - strand, within ECD_03379at 3551.138 kb on - strand, within ECD_03379at 3551.184 kb on - strand, within ECD_03379at 3551.224 kb on + strand, within ECD_03379at 3551.225 kb on - strand, within ECD_03379at 3551.269 kb on + strand, within ECD_03379at 3551.269 kb on + strand, within ECD_03379at 3551.269 kb on + strand, within ECD_03379at 3551.269 kb on + strand, within ECD_03379at 3551.270 kb on - strand, within ECD_03379at 3551.270 kb on - strand, within ECD_03379at 3551.270 kb on - strand, within ECD_03379at 3551.270 kb on - strand, within ECD_03379at 3551.270 kb on - strand, within ECD_03379at 3551.346 kb on + strandat 3551.347 kb on - strandat 3551.357 kb on - strandat 3551.435 kb on - strandat 3551.457 kb on + strandat 3551.457 kb on + strandat 3551.458 kb on - strandat 3551.458 kb on - strandat 3551.492 kb on - strandat 3551.513 kb on + strandat 3551.513 kb on + strandat 3551.529 kb on - strandat 3551.584 kb on - strandat 3551.615 kb on + strandat 3551.615 kb on + strandat 3551.615 kb on + strandat 3551.615 kb on + strandat 3551.615 kb on + strandat 3551.616 kb on - strandat 3551.616 kb on - strandat 3551.616 kb on - strandat 3551.616 kb on - strandat 3551.619 kb on + strandat 3551.619 kb on + strandat 3551.619 kb on + strandat 3551.620 kb on - strandat 3551.620 kb on - strandat 3551.639 kb on + strandat 3551.639 kb on + strandat 3551.639 kb on + strandat 3551.639 kb on + strandat 3551.640 kb on - strandat 3551.746 kb on + strand, within ECD_03380at 3551.747 kb on - strand, within ECD_03380at 3551.785 kb on - strand, within ECD_03380at 3551.874 kb on - strand, within ECD_03380at 3551.939 kb on + strand, within ECD_03380at 3551.940 kb on - strand, within ECD_03380at 3551.940 kb on - strand, within ECD_03380at 3551.940 kb on - strand, within ECD_03380at 3551.954 kb on - strand, within ECD_03380at 3552.047 kb on - strand, within ECD_03380at 3552.047 kb on - strand, within ECD_03380at 3552.088 kb on + strand, within ECD_03380at 3552.088 kb on + strand, within ECD_03380at 3552.088 kb on + strand, within ECD_03380at 3552.088 kb on + strand, within ECD_03380at 3552.088 kb on + strand, within ECD_03380at 3552.089 kb on - strand, within ECD_03380at 3552.187 kb on + strand, within ECD_03380at 3552.200 kb on + strand, within ECD_03380at 3552.225 kb on + strand, within ECD_03380at 3552.226 kb on - strand, within ECD_03380at 3552.226 kb on - strand, within ECD_03380at 3552.228 kb on + strand, within ECD_03380at 3552.229 kb on - strand, within ECD_03380at 3552.229 kb on - strand, within ECD_03380at 3552.229 kb on - strand, within ECD_03380at 3552.292 kb on + strand, within ECD_03380at 3552.292 kb on + strand, within ECD_03380at 3552.292 kb on + strand, within ECD_03380at 3552.293 kb on - strand, within ECD_03380at 3552.295 kb on + strand, within ECD_03380at 3552.296 kb on - strand, within ECD_03380at 3552.301 kb on + strand, within ECD_03380at 3552.302 kb on - strand, within ECD_03380at 3552.302 kb on - strand, within ECD_03380at 3552.302 kb on - strand, within ECD_03380at 3552.302 kb on - strand, within ECD_03380at 3552.331 kb on + strand, within ECD_03380at 3552.332 kb on - strand, within ECD_03380at 3552.332 kb on - strand, within ECD_03380at 3552.333 kb on + strand, within ECD_03380at 3552.334 kb on - strand, within ECD_03380at 3552.385 kb on + strand, within ECD_03380at 3552.386 kb on - strand, within ECD_03380at 3552.419 kb on + strand, within ECD_03380at 3552.419 kb on + strand, within ECD_03380at 3552.419 kb on + strand, within ECD_03380at 3552.420 kb on - strand, within ECD_03380at 3552.543 kb on + strand, within ECD_03380at 3552.543 kb on + strand, within ECD_03380at 3552.549 kb on + strand, within ECD_03380at 3552.550 kb on - strand, within ECD_03380at 3552.562 kb on + strand, within ECD_03380at 3552.562 kb on + strand, within ECD_03380at 3552.574 kb on + strand, within ECD_03380at 3552.650 kb on + strand, within ECD_03380at 3552.650 kb on + strand, within ECD_03380at 3552.651 kb on - strand, within ECD_03380at 3552.651 kb on - strand, within ECD_03380at 3552.663 kb on + strand, within ECD_03380at 3552.700 kb on + strand, within ECD_03380at 3552.701 kb on - strand, within ECD_03380at 3552.701 kb on - strand, within ECD_03380at 3552.705 kb on - strand, within ECD_03380at 3552.864 kb on + strand, within ECD_03380at 3552.865 kb on - strand, within ECD_03380at 3552.884 kb on - strand, within ECD_03380at 3552.970 kb on + strand, within ECD_03380at 3552.971 kb on - strand, within ECD_03380at 3552.990 kb on + strand, within ECD_03380at 3552.990 kb on + strand, within ECD_03380at 3552.990 kb on + strand, within ECD_03380at 3553.111 kb on + strand, within ECD_03380at 3553.111 kb on + strand, within ECD_03380at 3553.112 kb on - strand, within ECD_03380at 3553.114 kb on + strand, within ECD_03380at 3553.114 kb on + strand, within ECD_03380at 3553.115 kb on - strand, within ECD_03380at 3553.185 kb on + strand, within ECD_03380at 3553.186 kb on - strand, within ECD_03380at 3553.304 kb on - strand, within ECD_03380at 3553.307 kb on - strand, within ECD_03380at 3553.319 kb on - strand, within ECD_03380at 3553.447 kb on - strand, within ECD_03380at 3553.529 kb on + strand, within ECD_03380at 3553.529 kb on + strand, within ECD_03380at 3553.530 kb on - strand, within ECD_03380at 3553.782 kb on - strandat 3553.782 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.878 kb on + strandat 3553.878 kb on + strandat 3553.879 kb on - strandat 3553.879 kb on - strandat 3553.915 kb on - strandat 3554.007 kb on - strandat 3554.043 kb on - strandat 3554.061 kb on - strandat 3554.061 kb on - strandat 3554.061 kb on - strandat 3554.061 kb on - strandat 3554.158 kb on + strand, within ECD_03381at 3554.341 kb on - strand, within ECD_03381at 3554.341 kb on - strand, within ECD_03381at 3554.341 kb on - strand, within ECD_03381at 3554.395 kb on + strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.396 kb on - strand, within ECD_03381at 3554.401 kb on - strand, within ECD_03381at 3554.449 kb on + strand, within ECD_03381at 3554.449 kb on + strand, within ECD_03381at 3554.450 kb on - strand, within ECD_03381at 3554.450 kb on - strand, within ECD_03381at 3554.450 kb on - strand, within ECD_03381at 3554.509 kb on + strand, within ECD_03381at 3554.510 kb on - strand, within ECD_03381at 3554.537 kb on - strand, within ECD_03381at 3554.573 kb on + strand, within ECD_03381at 3554.626 kb on + strand, within ECD_03381at 3554.626 kb on + strand, within ECD_03381at 3554.675 kb on - strand, within ECD_03381at 3554.717 kb on + strand, within ECD_03381at 3554.718 kb on - strand, within ECD_03381at 3554.718 kb on - strand, within ECD_03381at 3554.758 kb on + strand, within ECD_03381at 3554.758 kb on + strand, within ECD_03381at 3554.758 kb on + strand, within ECD_03381at 3554.759 kb on - strand, within ECD_03381at 3554.767 kb on + strand, within ECD_03381

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
3,550,456 - ECD_03379 0.10 -0.2
3,550,456 - ECD_03379 0.10 -0.5
3,550,456 - ECD_03379 0.10 +0.6
3,550,458 + ECD_03379 0.10 +1.5
3,550,458 + ECD_03379 0.10 +0.7
3,550,458 + ECD_03379 0.10 +1.0
3,550,459 - ECD_03379 0.10 +0.8
3,550,707 + ECD_03379 0.33 +0.6
3,550,708 - ECD_03379 0.33 -1.8
3,550,708 - ECD_03379 0.33 +0.6
3,550,725 + ECD_03379 0.35 -2.1
3,550,754 + ECD_03379 0.37 -2.4
3,550,852 + ECD_03379 0.46 -0.5
3,550,852 + ECD_03379 0.46 +0.1
3,551,038 + ECD_03379 0.63 -1.7
3,551,039 - ECD_03379 0.63 +0.3
3,551,137 + ECD_03379 0.72 -0.5
3,551,137 + ECD_03379 0.72 +0.8
3,551,137 + ECD_03379 0.72 -0.3
3,551,137 + ECD_03379 0.72 -1.6
3,551,138 - ECD_03379 0.72 +0.7
3,551,138 - ECD_03379 0.72 -0.5
3,551,184 - ECD_03379 0.76 -0.1
3,551,224 + ECD_03379 0.80 +0.4
3,551,225 - ECD_03379 0.80 +0.3
3,551,269 + ECD_03379 0.84 -1.8
3,551,269 + ECD_03379 0.84 +0.9
3,551,269 + ECD_03379 0.84 +0.1
3,551,269 + ECD_03379 0.84 +0.6
3,551,270 - ECD_03379 0.84 +1.0
3,551,270 - ECD_03379 0.84 +0.4
3,551,270 - ECD_03379 0.84 -0.6
3,551,270 - ECD_03379 0.84 -0.8
3,551,270 - ECD_03379 0.84 +0.6
3,551,346 + +1.1
3,551,347 - -0.8
3,551,357 - -0.9
3,551,435 - +1.2
3,551,457 + +1.4
3,551,457 + -0.6
3,551,458 - -2.0
3,551,458 - +0.8
3,551,492 - -2.3
3,551,513 + +0.1
3,551,513 + +1.6
3,551,529 - +0.2
3,551,584 - +0.5
3,551,615 + -0.6
3,551,615 + -0.2
3,551,615 + +1.1
3,551,615 + +0.8
3,551,615 + +0.1
3,551,616 - +0.4
3,551,616 - -0.6
3,551,616 - +1.1
3,551,616 - +0.4
3,551,619 + -1.5
3,551,619 + +1.4
3,551,619 + -1.2
3,551,620 - -0.3
3,551,620 - -0.3
3,551,639 + -0.0
3,551,639 + -0.8
3,551,639 + -0.8
3,551,639 + -0.1
3,551,640 - +0.6
3,551,746 + ECD_03380 0.12 +2.5
3,551,747 - ECD_03380 0.12 -1.2
3,551,785 - ECD_03380 0.14 +2.4
3,551,874 - ECD_03380 0.18 +0.0
3,551,939 + ECD_03380 0.21 +0.6
3,551,940 - ECD_03380 0.21 -0.0
3,551,940 - ECD_03380 0.21 +1.6
3,551,940 - ECD_03380 0.21 +1.3
3,551,954 - ECD_03380 0.21 +0.1
3,552,047 - ECD_03380 0.25 -0.3
3,552,047 - ECD_03380 0.25 -1.6
3,552,088 + ECD_03380 0.27 -0.9
3,552,088 + ECD_03380 0.27 -0.8
3,552,088 + ECD_03380 0.27 +0.7
3,552,088 + ECD_03380 0.27 -1.6
3,552,088 + ECD_03380 0.27 -1.8
3,552,089 - ECD_03380 0.27 +0.5
3,552,187 + ECD_03380 0.31 -0.3
3,552,200 + ECD_03380 0.32 +0.4
3,552,225 + ECD_03380 0.33 -0.5
3,552,226 - ECD_03380 0.33 +0.1
3,552,226 - ECD_03380 0.33 +0.5
3,552,228 + ECD_03380 0.33 -0.1
3,552,229 - ECD_03380 0.33 +0.8
3,552,229 - ECD_03380 0.33 +0.1
3,552,229 - ECD_03380 0.33 -0.1
3,552,292 + ECD_03380 0.36 +0.9
3,552,292 + ECD_03380 0.36 -3.0
3,552,292 + ECD_03380 0.36 +0.4
3,552,293 - ECD_03380 0.36 +0.6
3,552,295 + ECD_03380 0.36 +1.5
3,552,296 - ECD_03380 0.36 -0.1
3,552,301 + ECD_03380 0.36 +0.0
3,552,302 - ECD_03380 0.36 -0.4
3,552,302 - ECD_03380 0.36 -1.9
3,552,302 - ECD_03380 0.36 -0.2
3,552,302 - ECD_03380 0.36 +0.5
3,552,331 + ECD_03380 0.37 +0.7
3,552,332 - ECD_03380 0.37 -0.1
3,552,332 - ECD_03380 0.37 +0.6
3,552,333 + ECD_03380 0.37 -0.1
3,552,334 - ECD_03380 0.38 -3.2
3,552,385 + ECD_03380 0.40 +0.8
3,552,386 - ECD_03380 0.40 +0.3
3,552,419 + ECD_03380 0.41 +0.2
3,552,419 + ECD_03380 0.41 +0.5
3,552,419 + ECD_03380 0.41 -0.6
3,552,420 - ECD_03380 0.41 -0.0
3,552,543 + ECD_03380 0.46 +0.1
3,552,543 + ECD_03380 0.46 -1.7
3,552,549 + ECD_03380 0.47 -0.4
3,552,550 - ECD_03380 0.47 +0.1
3,552,562 + ECD_03380 0.47 -1.2
3,552,562 + ECD_03380 0.47 -2.2
3,552,574 + ECD_03380 0.48 +0.5
3,552,650 + ECD_03380 0.51 -0.0
3,552,650 + ECD_03380 0.51 +0.0
3,552,651 - ECD_03380 0.51 +1.8
3,552,651 - ECD_03380 0.51 +0.2
3,552,663 + ECD_03380 0.52 +0.3
3,552,700 + ECD_03380 0.53 -1.0
3,552,701 - ECD_03380 0.53 -1.0
3,552,701 - ECD_03380 0.53 -0.2
3,552,705 - ECD_03380 0.53 +1.6
3,552,864 + ECD_03380 0.60 +1.2
3,552,865 - ECD_03380 0.60 +0.3
3,552,884 - ECD_03380 0.61 -0.2
3,552,970 + ECD_03380 0.65 -0.7
3,552,971 - ECD_03380 0.65 -1.2
3,552,990 + ECD_03380 0.66 +1.6
3,552,990 + ECD_03380 0.66 -2.6
3,552,990 + ECD_03380 0.66 -0.4
3,553,111 + ECD_03380 0.71 -1.9
3,553,111 + ECD_03380 0.71 +0.2
3,553,112 - ECD_03380 0.71 -2.1
3,553,114 + ECD_03380 0.71 +0.6
3,553,114 + ECD_03380 0.71 -1.4
3,553,115 - ECD_03380 0.71 -1.1
3,553,185 + ECD_03380 0.74 -0.2
3,553,186 - ECD_03380 0.74 +0.4
3,553,304 - ECD_03380 0.79 -0.7
3,553,307 - ECD_03380 0.79 -0.3
3,553,319 - ECD_03380 0.80 -1.4
3,553,447 - ECD_03380 0.85 +0.7
3,553,529 + ECD_03380 0.89 -2.7
3,553,529 + ECD_03380 0.89 +0.2
3,553,530 - ECD_03380 0.89 -0.4
3,553,782 - +0.1
3,553,782 - +1.1
3,553,802 - +1.0
3,553,802 - +1.5
3,553,878 + -0.3
3,553,878 + +1.6
3,553,879 - -0.8
3,553,879 - +0.4
3,553,915 - -0.8
3,554,007 - -2.4
3,554,043 - -0.1
3,554,061 - -3.4
3,554,061 - +0.2
3,554,061 - +2.9
3,554,061 - +0.3
3,554,158 + ECD_03381 0.13 +1.3
3,554,341 - ECD_03381 0.20 +0.9
3,554,341 - ECD_03381 0.20 +0.8
3,554,341 - ECD_03381 0.20 -2.2
3,554,395 + ECD_03381 0.22 +0.3
3,554,396 - ECD_03381 0.23 -2.1
3,554,396 - ECD_03381 0.23 +0.9
3,554,396 - ECD_03381 0.23 -0.5
3,554,396 - ECD_03381 0.23 +0.4
3,554,396 - ECD_03381 0.23 +0.2
3,554,396 - ECD_03381 0.23 +0.9
3,554,401 - ECD_03381 0.23 +0.3
3,554,449 + ECD_03381 0.25 -0.4
3,554,449 + ECD_03381 0.25 +0.2
3,554,450 - ECD_03381 0.25 -0.8
3,554,450 - ECD_03381 0.25 +1.3
3,554,450 - ECD_03381 0.25 +1.4
3,554,509 + ECD_03381 0.27 -0.9
3,554,510 - ECD_03381 0.27 +1.5
3,554,537 - ECD_03381 0.28 +0.1
3,554,573 + ECD_03381 0.29 +0.2
3,554,626 + ECD_03381 0.31 -1.4
3,554,626 + ECD_03381 0.31 -2.8
3,554,675 - ECD_03381 0.33 +0.9
3,554,717 + ECD_03381 0.35 -0.8
3,554,718 - ECD_03381 0.35 -2.4
3,554,718 - ECD_03381 0.35 +0.2
3,554,758 + ECD_03381 0.36 -3.1
3,554,758 + ECD_03381 0.36 -1.2
3,554,758 + ECD_03381 0.36 +1.0
3,554,759 - ECD_03381 0.36 +0.3
3,554,767 + ECD_03381 0.37 -1.4

Or see this region's nucleotide sequence