Strain Fitness in Escherichia coli BL21 around ECD_03374

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03373 and ECD_03374 are separated by 231 nucleotidesECD_03374 and ECD_03375 are separated by 95 nucleotides ECD_03373: ECD_03373 - cyclic-di-GMP phosphodiesterase, FlhDC-regulated, at 3,539,608 to 3,540,375 _03373 ECD_03374: ECD_03374 - 2-dehydro-3-deoxygluconokinase, at 3,540,607 to 3,541,536 _03374 ECD_03375: ECD_03375 - putative periplasmic M16 family chaperone, at 3,541,632 to 3,543,128 _03375 Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3539.609 kb on + strandat 3539.610 kb on - strandat 3539.642 kb on - strandat 3539.726 kb on - strand, within ECD_03373at 3539.753 kb on + strand, within ECD_03373at 3539.753 kb on + strand, within ECD_03373at 3539.764 kb on + strand, within ECD_03373at 3539.764 kb on + strand, within ECD_03373at 3539.764 kb on + strand, within ECD_03373at 3539.764 kb on + strand, within ECD_03373at 3539.764 kb on + strand, within ECD_03373at 3539.765 kb on - strand, within ECD_03373at 3539.765 kb on - strand, within ECD_03373at 3539.770 kb on + strand, within ECD_03373at 3539.770 kb on + strand, within ECD_03373at 3539.771 kb on - strand, within ECD_03373at 3539.771 kb on - strand, within ECD_03373at 3539.846 kb on + strand, within ECD_03373at 3539.846 kb on + strand, within ECD_03373at 3539.846 kb on + strand, within ECD_03373at 3539.847 kb on - strand, within ECD_03373at 3539.847 kb on - strand, within ECD_03373at 3539.847 kb on - strand, within ECD_03373at 3539.847 kb on - strand, within ECD_03373at 3539.847 kb on - strand, within ECD_03373at 3539.852 kb on + strand, within ECD_03373at 3540.048 kb on + strand, within ECD_03373at 3540.089 kb on - strand, within ECD_03373at 3540.089 kb on - strand, within ECD_03373at 3540.091 kb on - strand, within ECD_03373at 3540.169 kb on - strand, within ECD_03373at 3540.174 kb on - strand, within ECD_03373at 3540.229 kb on + strand, within ECD_03373at 3540.230 kb on - strand, within ECD_03373at 3540.264 kb on - strand, within ECD_03373at 3540.281 kb on + strand, within ECD_03373at 3540.281 kb on + strand, within ECD_03373at 3540.282 kb on - strand, within ECD_03373at 3540.282 kb on - strand, within ECD_03373at 3540.282 kb on - strand, within ECD_03373at 3540.282 kb on - strand, within ECD_03373at 3540.350 kb on - strandat 3540.370 kb on + strandat 3540.371 kb on - strandat 3540.371 kb on - strandat 3540.393 kb on + strandat 3540.425 kb on + strandat 3540.574 kb on - strandat 3540.607 kb on - strandat 3540.607 kb on - strandat 3540.607 kb on - strandat 3540.712 kb on + strand, within ECD_03374at 3540.712 kb on + strand, within ECD_03374at 3540.712 kb on + strand, within ECD_03374at 3540.712 kb on + strand, within ECD_03374at 3540.713 kb on - strand, within ECD_03374at 3540.754 kb on + strand, within ECD_03374at 3540.754 kb on + strand, within ECD_03374at 3540.783 kb on + strand, within ECD_03374at 3540.825 kb on + strand, within ECD_03374at 3540.826 kb on - strand, within ECD_03374at 3540.826 kb on - strand, within ECD_03374at 3540.868 kb on + strand, within ECD_03374at 3540.869 kb on - strand, within ECD_03374at 3540.871 kb on + strand, within ECD_03374at 3540.871 kb on + strand, within ECD_03374at 3540.872 kb on - strand, within ECD_03374at 3540.872 kb on - strand, within ECD_03374at 3540.872 kb on - strand, within ECD_03374at 3540.901 kb on - strand, within ECD_03374at 3540.907 kb on + strand, within ECD_03374at 3540.908 kb on - strand, within ECD_03374at 3540.908 kb on - strand, within ECD_03374at 3540.911 kb on - strand, within ECD_03374at 3540.995 kb on - strand, within ECD_03374at 3541.108 kb on - strand, within ECD_03374at 3541.108 kb on - strand, within ECD_03374at 3541.111 kb on + strand, within ECD_03374at 3541.111 kb on + strand, within ECD_03374at 3541.112 kb on - strand, within ECD_03374at 3541.112 kb on - strand, within ECD_03374at 3541.482 kb on + strandat 3541.482 kb on + strandat 3541.545 kb on + strandat 3541.546 kb on - strandat 3541.592 kb on + strandat 3541.593 kb on - strandat 3541.596 kb on + strandat 3541.597 kb on - strandat 3541.597 kb on - strandat 3541.612 kb on + strandat 3541.634 kb on - strandat 3541.634 kb on - strandat 3541.668 kb on + strandat 3541.668 kb on + strandat 3541.668 kb on + strandat 3541.669 kb on - strandat 3541.669 kb on - strandat 3541.785 kb on + strand, within ECD_03375at 3541.786 kb on - strand, within ECD_03375at 3541.788 kb on + strand, within ECD_03375at 3541.850 kb on + strand, within ECD_03375at 3541.851 kb on - strand, within ECD_03375at 3541.879 kb on + strand, within ECD_03375at 3541.880 kb on - strand, within ECD_03375at 3541.963 kb on + strand, within ECD_03375at 3542.008 kb on - strand, within ECD_03375at 3542.076 kb on - strand, within ECD_03375at 3542.301 kb on - strand, within ECD_03375at 3542.301 kb on - strand, within ECD_03375at 3542.333 kb on + strand, within ECD_03375at 3542.333 kb on + strand, within ECD_03375at 3542.334 kb on - strand, within ECD_03375at 3542.334 kb on - strand, within ECD_03375at 3542.336 kb on + strand, within ECD_03375at 3542.336 kb on + strand, within ECD_03375at 3542.336 kb on + strand, within ECD_03375at 3542.337 kb on - strand, within ECD_03375at 3542.337 kb on - strand, within ECD_03375at 3542.424 kb on + strand, within ECD_03375at 3542.492 kb on - strand, within ECD_03375at 3542.492 kb on - strand, within ECD_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,539,609 + -0.5
3,539,610 - +0.2
3,539,642 - +1.8
3,539,726 - ECD_03373 0.15 +1.2
3,539,753 + ECD_03373 0.19 +0.2
3,539,753 + ECD_03373 0.19 -2.0
3,539,764 + ECD_03373 0.20 -2.0
3,539,764 + ECD_03373 0.20 -0.7
3,539,764 + ECD_03373 0.20 -0.2
3,539,764 + ECD_03373 0.20 -2.1
3,539,764 + ECD_03373 0.20 -0.3
3,539,765 - ECD_03373 0.20 -0.0
3,539,765 - ECD_03373 0.20 +0.3
3,539,770 + ECD_03373 0.21 +0.4
3,539,770 + ECD_03373 0.21 +0.0
3,539,771 - ECD_03373 0.21 +0.2
3,539,771 - ECD_03373 0.21 +0.7
3,539,846 + ECD_03373 0.31 -1.7
3,539,846 + ECD_03373 0.31 +0.0
3,539,846 + ECD_03373 0.31 -0.8
3,539,847 - ECD_03373 0.31 +1.1
3,539,847 - ECD_03373 0.31 +2.3
3,539,847 - ECD_03373 0.31 +0.1
3,539,847 - ECD_03373 0.31 +0.5
3,539,847 - ECD_03373 0.31 -2.2
3,539,852 + ECD_03373 0.32 +0.8
3,540,048 + ECD_03373 0.57 -0.7
3,540,089 - ECD_03373 0.63 -1.8
3,540,089 - ECD_03373 0.63 -1.3
3,540,091 - ECD_03373 0.63 +0.3
3,540,169 - ECD_03373 0.73 -0.9
3,540,174 - ECD_03373 0.74 -0.4
3,540,229 + ECD_03373 0.81 +0.5
3,540,230 - ECD_03373 0.81 -1.1
3,540,264 - ECD_03373 0.85 -1.0
3,540,281 + ECD_03373 0.88 -0.1
3,540,281 + ECD_03373 0.88 -1.8
3,540,282 - ECD_03373 0.88 -1.5
3,540,282 - ECD_03373 0.88 +0.9
3,540,282 - ECD_03373 0.88 -0.4
3,540,282 - ECD_03373 0.88 +0.5
3,540,350 - +1.2
3,540,370 + -0.4
3,540,371 - -0.3
3,540,371 - +1.6
3,540,393 + +0.1
3,540,425 + -1.7
3,540,574 - -0.4
3,540,607 - -1.1
3,540,607 - +1.8
3,540,607 - +0.8
3,540,712 + ECD_03374 0.11 -1.0
3,540,712 + ECD_03374 0.11 -0.8
3,540,712 + ECD_03374 0.11 -2.2
3,540,712 + ECD_03374 0.11 -2.4
3,540,713 - ECD_03374 0.11 -1.4
3,540,754 + ECD_03374 0.16 +0.2
3,540,754 + ECD_03374 0.16 -1.8
3,540,783 + ECD_03374 0.19 -1.1
3,540,825 + ECD_03374 0.23 +0.9
3,540,826 - ECD_03374 0.24 -1.7
3,540,826 - ECD_03374 0.24 -1.4
3,540,868 + ECD_03374 0.28 -0.3
3,540,869 - ECD_03374 0.28 +0.5
3,540,871 + ECD_03374 0.28 -0.2
3,540,871 + ECD_03374 0.28 -1.2
3,540,872 - ECD_03374 0.28 -1.2
3,540,872 - ECD_03374 0.28 +0.2
3,540,872 - ECD_03374 0.28 -0.7
3,540,901 - ECD_03374 0.32 -1.2
3,540,907 + ECD_03374 0.32 +1.0
3,540,908 - ECD_03374 0.32 -0.8
3,540,908 - ECD_03374 0.32 -0.7
3,540,911 - ECD_03374 0.33 +0.5
3,540,995 - ECD_03374 0.42 -0.5
3,541,108 - ECD_03374 0.54 -0.2
3,541,108 - ECD_03374 0.54 +0.3
3,541,111 + ECD_03374 0.54 +1.7
3,541,111 + ECD_03374 0.54 +0.3
3,541,112 - ECD_03374 0.54 -3.9
3,541,112 - ECD_03374 0.54 +0.2
3,541,482 + -0.5
3,541,482 + -0.6
3,541,545 + -0.8
3,541,546 - +0.0
3,541,592 + +0.1
3,541,593 - +0.3
3,541,596 + -0.1
3,541,597 - +0.1
3,541,597 - -0.0
3,541,612 + +2.2
3,541,634 - +0.8
3,541,634 - -2.0
3,541,668 + +1.7
3,541,668 + +0.1
3,541,668 + -0.4
3,541,669 - -2.6
3,541,669 - +1.2
3,541,785 + ECD_03375 0.10 -1.6
3,541,786 - ECD_03375 0.10 +0.2
3,541,788 + ECD_03375 0.10 -1.8
3,541,850 + ECD_03375 0.15 +0.2
3,541,851 - ECD_03375 0.15 -0.3
3,541,879 + ECD_03375 0.16 -0.3
3,541,880 - ECD_03375 0.17 -0.8
3,541,963 + ECD_03375 0.22 -2.0
3,542,008 - ECD_03375 0.25 -1.4
3,542,076 - ECD_03375 0.30 -0.0
3,542,301 - ECD_03375 0.45 +0.3
3,542,301 - ECD_03375 0.45 -1.6
3,542,333 + ECD_03375 0.47 -2.3
3,542,333 + ECD_03375 0.47 -1.7
3,542,334 - ECD_03375 0.47 +0.1
3,542,334 - ECD_03375 0.47 -0.8
3,542,336 + ECD_03375 0.47 -0.6
3,542,336 + ECD_03375 0.47 -2.4
3,542,336 + ECD_03375 0.47 +0.1
3,542,337 - ECD_03375 0.47 -1.4
3,542,337 - ECD_03375 0.47 -2.3
3,542,424 + ECD_03375 0.53 -0.4
3,542,492 - ECD_03375 0.57 -1.1
3,542,492 - ECD_03375 0.57 -1.4

Or see this region's nucleotide sequence