Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03371 and ECD_03372 are separated by 181 nucleotides ECD_03372 and ECD_03373 are separated by 69 nucleotides
ECD_03371: ECD_03371 - putative MFS transporter; membrane protein, at 3,535,974 to 3,537,296
_03371
ECD_03372: ECD_03372 - putative inner membrane-anchored periplasmic AsmA family protein, at 3,537,478 to 3,539,538
_03372
ECD_03373: ECD_03373 - cyclic-di-GMP phosphodiesterase, FlhDC-regulated, at 3,539,608 to 3,540,375
_03373
Position (kb)
3537
3538
3539
3540 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3536.579 kb on + strand, within ECD_03371 at 3536.579 kb on + strand, within ECD_03371 at 3536.613 kb on + strand, within ECD_03371 at 3536.613 kb on + strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.614 kb on - strand, within ECD_03371 at 3536.741 kb on + strand, within ECD_03371 at 3536.742 kb on - strand, within ECD_03371 at 3536.742 kb on - strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.754 kb on + strand, within ECD_03371 at 3536.755 kb on - strand, within ECD_03371 at 3536.755 kb on - strand, within ECD_03371 at 3536.755 kb on - strand, within ECD_03371 at 3536.755 kb on - strand, within ECD_03371 at 3536.755 kb on - strand, within ECD_03371 at 3536.756 kb on + strand, within ECD_03371 at 3536.767 kb on - strand, within ECD_03371 at 3536.781 kb on + strand, within ECD_03371 at 3536.781 kb on + strand, within ECD_03371 at 3536.782 kb on - strand, within ECD_03371 at 3536.786 kb on + strand, within ECD_03371 at 3536.786 kb on + strand, within ECD_03371 at 3536.786 kb on + strand, within ECD_03371 at 3536.786 kb on + strand, within ECD_03371 at 3536.787 kb on - strand, within ECD_03371 at 3536.787 kb on - strand, within ECD_03371 at 3536.795 kb on + strand, within ECD_03371 at 3536.868 kb on - strand, within ECD_03371 at 3536.938 kb on + strand, within ECD_03371 at 3536.938 kb on + strand, within ECD_03371 at 3537.132 kb on + strand, within ECD_03371 at 3537.133 kb on - strand, within ECD_03371 at 3537.140 kb on - strand, within ECD_03371 at 3537.140 kb on - strand, within ECD_03371 at 3537.171 kb on + strand at 3537.171 kb on + strand at 3537.172 kb on - strand at 3537.172 kb on - strand at 3537.172 kb on - strand at 3537.173 kb on + strand at 3537.174 kb on - strand at 3537.195 kb on - strand at 3537.195 kb on - strand at 3537.199 kb on - strand at 3537.220 kb on + strand at 3537.220 kb on + strand at 3537.222 kb on + strand at 3537.222 kb on + strand at 3537.222 kb on + strand at 3537.222 kb on + strand at 3537.223 kb on - strand at 3537.295 kb on - strand at 3537.295 kb on - strand at 3537.295 kb on - strand at 3537.297 kb on + strand at 3537.298 kb on - strand at 3537.327 kb on - strand at 3537.350 kb on + strand at 3537.350 kb on + strand at 3537.350 kb on + strand at 3537.351 kb on - strand at 3537.444 kb on + strand at 3537.445 kb on - strand at 3537.473 kb on + strand at 3537.474 kb on - strand at 3537.474 kb on - strand at 3537.762 kb on + strand, within ECD_03372 at 3537.763 kb on - strand, within ECD_03372 at 3537.871 kb on + strand, within ECD_03372 at 3537.871 kb on + strand, within ECD_03372 at 3537.887 kb on + strand, within ECD_03372 at 3537.887 kb on + strand, within ECD_03372 at 3537.887 kb on + strand, within ECD_03372 at 3537.887 kb on + strand, within ECD_03372 at 3537.888 kb on - strand, within ECD_03372 at 3538.000 kb on - strand, within ECD_03372 at 3538.012 kb on + strand, within ECD_03372 at 3538.149 kb on + strand, within ECD_03372 at 3538.149 kb on + strand, within ECD_03372 at 3538.150 kb on - strand, within ECD_03372 at 3538.224 kb on + strand, within ECD_03372 at 3538.224 kb on + strand, within ECD_03372 at 3538.224 kb on + strand, within ECD_03372 at 3538.224 kb on + strand, within ECD_03372 at 3538.225 kb on - strand, within ECD_03372 at 3538.225 kb on - strand, within ECD_03372 at 3538.225 kb on - strand, within ECD_03372 at 3538.230 kb on + strand, within ECD_03372 at 3538.334 kb on + strand, within ECD_03372 at 3538.334 kb on + strand, within ECD_03372 at 3538.334 kb on + strand, within ECD_03372 at 3538.334 kb on + strand, within ECD_03372 at 3538.335 kb on - strand, within ECD_03372 at 3538.335 kb on - strand, within ECD_03372 at 3538.554 kb on + strand, within ECD_03372 at 3538.863 kb on + strand, within ECD_03372 at 3538.864 kb on - strand, within ECD_03372 at 3538.864 kb on - strand, within ECD_03372 at 3538.864 kb on - strand, within ECD_03372 at 3538.865 kb on + strand, within ECD_03372 at 3538.866 kb on - strand, within ECD_03372 at 3539.002 kb on + strand, within ECD_03372 at 3539.003 kb on - strand, within ECD_03372 at 3539.043 kb on + strand, within ECD_03372 at 3539.043 kb on + strand, within ECD_03372 at 3539.125 kb on - strand, within ECD_03372 at 3539.125 kb on - strand, within ECD_03372 at 3539.305 kb on + strand, within ECD_03372 at 3539.305 kb on + strand, within ECD_03372 at 3539.305 kb on + strand, within ECD_03372 at 3539.427 kb on + strand at 3539.553 kb on + strand at 3539.554 kb on - strand at 3539.554 kb on - strand at 3539.554 kb on - strand at 3539.579 kb on + strand at 3539.609 kb on + strand at 3539.610 kb on - strand at 3539.642 kb on - strand at 3539.726 kb on - strand, within ECD_03373 at 3539.753 kb on + strand, within ECD_03373 at 3539.753 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.765 kb on - strand, within ECD_03373 at 3539.765 kb on - strand, within ECD_03373 at 3539.770 kb on + strand, within ECD_03373 at 3539.770 kb on + strand, within ECD_03373 at 3539.771 kb on - strand, within ECD_03373 at 3539.771 kb on - strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.852 kb on + strand, within ECD_03373 at 3540.048 kb on + strand, within ECD_03373 at 3540.089 kb on - strand, within ECD_03373 at 3540.089 kb on - strand, within ECD_03373 at 3540.091 kb on - strand, within ECD_03373 at 3540.169 kb on - strand, within ECD_03373 at 3540.174 kb on - strand, within ECD_03373 at 3540.229 kb on + strand, within ECD_03373 at 3540.230 kb on - strand, within ECD_03373 at 3540.264 kb on - strand, within ECD_03373 at 3540.281 kb on + strand, within ECD_03373 at 3540.281 kb on + strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.350 kb on - strand at 3540.370 kb on + strand at 3540.371 kb on - strand at 3540.371 kb on - strand at 3540.393 kb on + strand at 3540.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,536,579 + ECD_03371 0.46 +0.7 3,536,579 + ECD_03371 0.46 -2.0 3,536,613 + ECD_03371 0.48 -0.6 3,536,613 + ECD_03371 0.48 -1.4 3,536,614 - ECD_03371 0.48 -0.3 3,536,614 - ECD_03371 0.48 -0.6 3,536,614 - ECD_03371 0.48 +0.2 3,536,614 - ECD_03371 0.48 +0.1 3,536,614 - ECD_03371 0.48 +0.3 3,536,614 - ECD_03371 0.48 -0.6 3,536,614 - ECD_03371 0.48 -1.6 3,536,614 - ECD_03371 0.48 -1.0 3,536,741 + ECD_03371 0.58 -0.4 3,536,742 - ECD_03371 0.58 +0.5 3,536,742 - ECD_03371 0.58 -2.9 3,536,754 + ECD_03371 0.59 +0.8 3,536,754 + ECD_03371 0.59 -1.1 3,536,754 + ECD_03371 0.59 -0.9 3,536,754 + ECD_03371 0.59 -3.1 3,536,754 + ECD_03371 0.59 -0.3 3,536,754 + ECD_03371 0.59 +1.5 3,536,755 - ECD_03371 0.59 +1.0 3,536,755 - ECD_03371 0.59 -1.7 3,536,755 - ECD_03371 0.59 -0.7 3,536,755 - ECD_03371 0.59 -0.2 3,536,755 - ECD_03371 0.59 +0.5 3,536,756 + ECD_03371 0.59 -0.7 3,536,767 - ECD_03371 0.60 -0.6 3,536,781 + ECD_03371 0.61 +0.3 3,536,781 + ECD_03371 0.61 -1.4 3,536,782 - ECD_03371 0.61 +1.0 3,536,786 + ECD_03371 0.61 +0.3 3,536,786 + ECD_03371 0.61 +0.2 3,536,786 + ECD_03371 0.61 -2.1 3,536,786 + ECD_03371 0.61 -1.2 3,536,787 - ECD_03371 0.61 -1.3 3,536,787 - ECD_03371 0.61 +0.9 3,536,795 + ECD_03371 0.62 -1.0 3,536,868 - ECD_03371 0.68 +1.1 3,536,938 + ECD_03371 0.73 -0.3 3,536,938 + ECD_03371 0.73 -1.8 3,537,132 + ECD_03371 0.88 -1.0 3,537,133 - ECD_03371 0.88 -0.2 3,537,140 - ECD_03371 0.88 +1.2 3,537,140 - ECD_03371 0.88 -0.7 3,537,171 + +2.1 3,537,171 + +0.4 3,537,172 - +1.0 3,537,172 - +1.2 3,537,172 - +0.1 3,537,173 + -1.7 3,537,174 - +0.8 3,537,195 - -1.8 3,537,195 - +1.1 3,537,199 - -1.1 3,537,220 + -1.0 3,537,220 + -0.5 3,537,222 + +0.7 3,537,222 + -0.3 3,537,222 + -0.7 3,537,222 + +0.6 3,537,223 - +0.6 3,537,295 - -3.1 3,537,295 - +1.7 3,537,295 - +0.2 3,537,297 + -0.6 3,537,298 - -1.1 3,537,327 - +1.0 3,537,350 + -1.6 3,537,350 + -0.6 3,537,350 + +0.0 3,537,351 - -0.2 3,537,444 + +0.6 3,537,445 - -0.3 3,537,473 + +0.3 3,537,474 - -1.2 3,537,474 - +0.1 3,537,762 + ECD_03372 0.14 -3.0 3,537,763 - ECD_03372 0.14 -0.6 3,537,871 + ECD_03372 0.19 -1.8 3,537,871 + ECD_03372 0.19 +0.4 3,537,887 + ECD_03372 0.20 -0.6 3,537,887 + ECD_03372 0.20 +1.5 3,537,887 + ECD_03372 0.20 +0.5 3,537,887 + ECD_03372 0.20 -0.0 3,537,888 - ECD_03372 0.20 -1.4 3,538,000 - ECD_03372 0.25 -0.3 3,538,012 + ECD_03372 0.26 -0.9 3,538,149 + ECD_03372 0.33 -0.3 3,538,149 + ECD_03372 0.33 -0.6 3,538,150 - ECD_03372 0.33 +0.7 3,538,224 + ECD_03372 0.36 -1.4 3,538,224 + ECD_03372 0.36 +0.4 3,538,224 + ECD_03372 0.36 -1.3 3,538,224 + ECD_03372 0.36 -0.9 3,538,225 - ECD_03372 0.36 +0.9 3,538,225 - ECD_03372 0.36 -1.6 3,538,225 - ECD_03372 0.36 -4.2 3,538,230 + ECD_03372 0.36 +0.2 3,538,334 + ECD_03372 0.42 -0.5 3,538,334 + ECD_03372 0.42 -1.4 3,538,334 + ECD_03372 0.42 -3.3 3,538,334 + ECD_03372 0.42 -0.4 3,538,335 - ECD_03372 0.42 -0.2 3,538,335 - ECD_03372 0.42 -2.8 3,538,554 + ECD_03372 0.52 -0.7 3,538,863 + ECD_03372 0.67 -1.1 3,538,864 - ECD_03372 0.67 +0.1 3,538,864 - ECD_03372 0.67 +0.7 3,538,864 - ECD_03372 0.67 +1.1 3,538,865 + ECD_03372 0.67 -1.9 3,538,866 - ECD_03372 0.67 +1.6 3,539,002 + ECD_03372 0.74 -0.0 3,539,003 - ECD_03372 0.74 +1.2 3,539,043 + ECD_03372 0.76 +0.5 3,539,043 + ECD_03372 0.76 -3.1 3,539,125 - ECD_03372 0.80 -1.6 3,539,125 - ECD_03372 0.80 +0.7 3,539,305 + ECD_03372 0.89 +0.4 3,539,305 + ECD_03372 0.89 +0.4 3,539,305 + ECD_03372 0.89 -0.6 3,539,427 + +0.5 3,539,553 + -0.9 3,539,554 - -0.4 3,539,554 - -2.6 3,539,554 - +0.7 3,539,579 + -0.5 3,539,609 + -0.5 3,539,610 - +0.2 3,539,642 - +1.8 3,539,726 - ECD_03373 0.15 +1.1 3,539,753 + ECD_03373 0.19 +0.2 3,539,753 + ECD_03373 0.19 -2.0 3,539,764 + ECD_03373 0.20 -2.0 3,539,764 + ECD_03373 0.20 -0.7 3,539,764 + ECD_03373 0.20 -0.2 3,539,764 + ECD_03373 0.20 -2.1 3,539,764 + ECD_03373 0.20 -0.3 3,539,765 - ECD_03373 0.20 -0.0 3,539,765 - ECD_03373 0.20 +0.3 3,539,770 + ECD_03373 0.21 +0.4 3,539,770 + ECD_03373 0.21 +0.0 3,539,771 - ECD_03373 0.21 +0.2 3,539,771 - ECD_03373 0.21 +0.7 3,539,846 + ECD_03373 0.31 -1.7 3,539,846 + ECD_03373 0.31 +0.0 3,539,846 + ECD_03373 0.31 -0.8 3,539,847 - ECD_03373 0.31 +1.1 3,539,847 - ECD_03373 0.31 +2.3 3,539,847 - ECD_03373 0.31 +0.1 3,539,847 - ECD_03373 0.31 +0.4 3,539,847 - ECD_03373 0.31 -2.2 3,539,852 + ECD_03373 0.32 +0.8 3,540,048 + ECD_03373 0.57 -0.7 3,540,089 - ECD_03373 0.63 -1.8 3,540,089 - ECD_03373 0.63 -1.3 3,540,091 - ECD_03373 0.63 +0.3 3,540,169 - ECD_03373 0.73 -0.9 3,540,174 - ECD_03373 0.74 -0.4 3,540,229 + ECD_03373 0.81 +0.5 3,540,230 - ECD_03373 0.81 -1.1 3,540,264 - ECD_03373 0.85 -1.0 3,540,281 + ECD_03373 0.88 -0.1 3,540,281 + ECD_03373 0.88 -1.8 3,540,282 - ECD_03373 0.88 -1.5 3,540,282 - ECD_03373 0.88 +0.8 3,540,282 - ECD_03373 0.88 -0.4 3,540,282 - ECD_03373 0.88 +0.5 3,540,350 - +1.2 3,540,370 + -0.4 3,540,371 - -0.3 3,540,371 - +1.6 3,540,393 + +0.1 3,540,425 + -1.7
Or see this region's nucleotide sequence