Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03314 and ECD_03315 overlap by 11 nucleotides ECD_03315 and ECD_03316 are separated by 2 nucleotides ECD_03316 and ECD_03317 are separated by 140 nucleotides ECD_03317 and ECD_03318 are separated by 73 nucleotides
ECD_03314: ECD_03314 - 16S rRNA m(2)G966 methyltransferase, SAM-dependent, at 3,466,777 to 3,467,373
_03314
ECD_03315: ECD_03315 - DUF1145 family protein, at 3,467,363 to 3,467,632
_03315
ECD_03316: ECD_03316 - DUF2500 family protein, at 3,467,635 to 3,467,994
_03316
ECD_03317: ECD_03317 - TMEM86 family putative inner membrane protein, at 3,468,135 to 3,468,761
_03317
ECD_03318: ECD_03318 - zinc, cobalt and lead efflux system, at 3,468,835 to 3,471,033
_03318
Position (kb)
3468
3469 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3467.180 kb on + strand, within ECD_03314 at 3467.239 kb on + strand, within ECD_03314 at 3467.294 kb on + strand, within ECD_03314 at 3467.335 kb on + strand at 3467.497 kb on + strand, within ECD_03315 at 3467.636 kb on + strand at 3467.636 kb on + strand at 3467.636 kb on + strand at 3467.636 kb on + strand at 3467.636 kb on + strand at 3467.636 kb on + strand at 3467.674 kb on - strand, within ECD_03316 at 3467.675 kb on + strand, within ECD_03316 at 3467.675 kb on + strand, within ECD_03316 at 3467.675 kb on + strand, within ECD_03316 at 3467.714 kb on + strand, within ECD_03316 at 3467.715 kb on - strand, within ECD_03316 at 3467.715 kb on - strand, within ECD_03316 at 3467.787 kb on + strand, within ECD_03316 at 3467.788 kb on - strand, within ECD_03316 at 3467.806 kb on + strand, within ECD_03316 at 3467.807 kb on - strand, within ECD_03316 at 3467.898 kb on + strand, within ECD_03316 at 3467.898 kb on + strand, within ECD_03316 at 3467.926 kb on - strand, within ECD_03316 at 3468.029 kb on + strand at 3468.029 kb on + strand at 3468.041 kb on + strand at 3468.041 kb on + strand at 3468.041 kb on + strand at 3468.041 kb on + strand at 3468.042 kb on - strand at 3468.042 kb on - strand at 3468.091 kb on + strand at 3468.132 kb on - strand at 3468.287 kb on + strand, within ECD_03317 at 3468.287 kb on + strand, within ECD_03317 at 3468.288 kb on - strand, within ECD_03317 at 3468.288 kb on - strand, within ECD_03317 at 3468.288 kb on - strand, within ECD_03317 at 3468.291 kb on + strand, within ECD_03317 at 3468.292 kb on - strand, within ECD_03317 at 3468.292 kb on - strand, within ECD_03317 at 3468.292 kb on - strand, within ECD_03317 at 3468.292 kb on - strand, within ECD_03317 at 3468.366 kb on + strand, within ECD_03317 at 3468.366 kb on + strand, within ECD_03317 at 3468.367 kb on - strand, within ECD_03317 at 3468.402 kb on + strand, within ECD_03317 at 3468.402 kb on + strand, within ECD_03317 at 3468.402 kb on + strand, within ECD_03317 at 3468.403 kb on - strand, within ECD_03317 at 3468.403 kb on - strand, within ECD_03317 at 3468.403 kb on - strand, within ECD_03317 at 3468.412 kb on - strand, within ECD_03317 at 3468.517 kb on - strand, within ECD_03317 at 3468.527 kb on + strand, within ECD_03317 at 3468.528 kb on - strand, within ECD_03317 at 3468.641 kb on + strand, within ECD_03317 at 3468.641 kb on + strand, within ECD_03317 at 3468.648 kb on - strand, within ECD_03317 at 3468.648 kb on - strand, within ECD_03317 at 3468.718 kb on - strand at 3468.753 kb on + strand at 3468.762 kb on + strand at 3468.985 kb on - strand at 3469.031 kb on + strand at 3469.032 kb on - strand at 3469.032 kb on - strand at 3469.231 kb on - strand, within ECD_03318 at 3469.276 kb on - strand, within ECD_03318 at 3469.372 kb on + strand, within ECD_03318 at 3469.372 kb on + strand, within ECD_03318 at 3469.372 kb on + strand, within ECD_03318 at 3469.372 kb on + strand, within ECD_03318 at 3469.373 kb on - strand, within ECD_03318 at 3469.408 kb on - strand, within ECD_03318 at 3469.735 kb on - strand, within ECD_03318
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,467,180 + ECD_03314 0.68 +0.3 3,467,239 + ECD_03314 0.77 -0.7 3,467,294 + ECD_03314 0.87 -3.3 3,467,335 + -0.5 3,467,497 + ECD_03315 0.50 -1.2 3,467,636 + +0.5 3,467,636 + +0.0 3,467,636 + +0.5 3,467,636 + +1.4 3,467,636 + -0.9 3,467,636 + -1.3 3,467,674 - ECD_03316 0.11 +0.8 3,467,675 + ECD_03316 0.11 +1.4 3,467,675 + ECD_03316 0.11 +0.0 3,467,675 + ECD_03316 0.11 +1.2 3,467,714 + ECD_03316 0.22 +0.9 3,467,715 - ECD_03316 0.22 -1.2 3,467,715 - ECD_03316 0.22 -3.4 3,467,787 + ECD_03316 0.42 -0.9 3,467,788 - ECD_03316 0.42 +0.2 3,467,806 + ECD_03316 0.47 +0.3 3,467,807 - ECD_03316 0.48 -0.1 3,467,898 + ECD_03316 0.73 -1.0 3,467,898 + ECD_03316 0.73 +0.8 3,467,926 - ECD_03316 0.81 +0.6 3,468,029 + -0.8 3,468,029 + -1.6 3,468,041 + -2.0 3,468,041 + +0.7 3,468,041 + -2.5 3,468,041 + -0.5 3,468,042 - -0.1 3,468,042 - +0.7 3,468,091 + +0.1 3,468,132 - +0.1 3,468,287 + ECD_03317 0.24 +0.1 3,468,287 + ECD_03317 0.24 -0.7 3,468,288 - ECD_03317 0.24 +1.5 3,468,288 - ECD_03317 0.24 -0.3 3,468,288 - ECD_03317 0.24 -1.6 3,468,291 + ECD_03317 0.25 +0.8 3,468,292 - ECD_03317 0.25 -0.0 3,468,292 - ECD_03317 0.25 +1.8 3,468,292 - ECD_03317 0.25 +0.7 3,468,292 - ECD_03317 0.25 -0.4 3,468,366 + ECD_03317 0.37 +1.7 3,468,366 + ECD_03317 0.37 +0.9 3,468,367 - ECD_03317 0.37 +1.4 3,468,402 + ECD_03317 0.43 +0.4 3,468,402 + ECD_03317 0.43 +0.3 3,468,402 + ECD_03317 0.43 -1.2 3,468,403 - ECD_03317 0.43 -0.0 3,468,403 - ECD_03317 0.43 -0.3 3,468,403 - ECD_03317 0.43 +0.0 3,468,412 - ECD_03317 0.44 +1.3 3,468,517 - ECD_03317 0.61 -1.8 3,468,527 + ECD_03317 0.63 +0.1 3,468,528 - ECD_03317 0.63 +1.8 3,468,641 + ECD_03317 0.81 +0.5 3,468,641 + ECD_03317 0.81 +0.5 3,468,648 - ECD_03317 0.82 -0.1 3,468,648 - ECD_03317 0.82 +0.2 3,468,718 - -1.4 3,468,753 + +1.6 3,468,762 + +0.2 3,468,985 - +0.5 3,469,031 + -0.7 3,469,032 - -1.9 3,469,032 - +0.8 3,469,231 - ECD_03318 0.18 +0.2 3,469,276 - ECD_03318 0.20 +1.7 3,469,372 + ECD_03318 0.24 +0.3 3,469,372 + ECD_03318 0.24 -0.5 3,469,372 + ECD_03318 0.24 +0.9 3,469,372 + ECD_03318 0.24 +0.5 3,469,373 - ECD_03318 0.24 -0.7 3,469,408 - ECD_03318 0.26 -0.3 3,469,735 - ECD_03318 0.41 -2.9
Or see this region's nucleotide sequence