Strain Fitness in Escherichia coli BL21 around ECD_03250

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03249 and ECD_03250 are separated by 319 nucleotidesECD_03250 and ECD_03251 are separated by 64 nucleotidesECD_03251 and ECD_03252 are separated by 10 nucleotides ECD_03249: ECD_03249 - adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase, at 3,385,969 to 3,386,529 _03249 ECD_03250: ECD_03250 - putative RcsCDB-response attenuator, inner membrane protein, at 3,386,849 to 3,388,984 _03250 ECD_03251: ECD_03251 - GMP/IMP nucleotidase, at 3,389,049 to 3,389,717 _03251 ECD_03252: ECD_03252 - ribosome-associated heat shock protein Hsp15, at 3,389,728 to 3,390,129 _03252 Position (kb) 3386 3387 3388 3389Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3385.911 kb on - strandat 3385.913 kb on - strandat 3385.963 kb on - strandat 3385.971 kb on - strandat 3385.971 kb on - strandat 3386.025 kb on + strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.026 kb on - strand, within ECD_03249at 3386.415 kb on - strand, within ECD_03249at 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.539 kb on + strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.540 kb on - strandat 3386.624 kb on - strandat 3386.690 kb on + strandat 3386.713 kb on + strandat 3386.714 kb on - strandat 3386.740 kb on + strandat 3386.794 kb on + strandat 3386.794 kb on + strandat 3386.795 kb on - strandat 3386.795 kb on - strandat 3386.795 kb on - strandat 3386.795 kb on - strandat 3386.830 kb on + strandat 3386.830 kb on + strandat 3386.831 kb on - strandat 3386.834 kb on + strandat 3386.834 kb on + strandat 3386.834 kb on + strandat 3386.835 kb on - strandat 3386.835 kb on - strandat 3386.835 kb on - strandat 3386.835 kb on - strandat 3386.835 kb on - strandat 3386.835 kb on - strandat 3386.896 kb on - strandat 3386.914 kb on - strandat 3386.914 kb on - strandat 3386.999 kb on - strandat 3387.036 kb on + strandat 3387.131 kb on - strand, within ECD_03250at 3387.131 kb on - strand, within ECD_03250at 3387.177 kb on - strand, within ECD_03250at 3387.180 kb on - strand, within ECD_03250at 3387.192 kb on + strand, within ECD_03250at 3387.224 kb on + strand, within ECD_03250at 3387.225 kb on - strand, within ECD_03250at 3387.225 kb on - strand, within ECD_03250at 3387.225 kb on - strand, within ECD_03250at 3387.225 kb on - strand, within ECD_03250at 3387.281 kb on - strand, within ECD_03250at 3387.311 kb on + strand, within ECD_03250at 3387.312 kb on - strand, within ECD_03250at 3387.312 kb on - strand, within ECD_03250at 3387.312 kb on - strand, within ECD_03250at 3387.399 kb on + strand, within ECD_03250at 3387.431 kb on + strand, within ECD_03250at 3387.522 kb on + strand, within ECD_03250at 3387.522 kb on + strand, within ECD_03250at 3387.523 kb on - strand, within ECD_03250at 3387.737 kb on + strand, within ECD_03250at 3387.737 kb on + strand, within ECD_03250at 3387.737 kb on + strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.738 kb on - strand, within ECD_03250at 3387.775 kb on + strand, within ECD_03250at 3387.776 kb on - strand, within ECD_03250at 3387.779 kb on + strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.780 kb on - strand, within ECD_03250at 3387.795 kb on + strand, within ECD_03250at 3387.795 kb on + strand, within ECD_03250at 3387.795 kb on + strand, within ECD_03250at 3387.796 kb on - strand, within ECD_03250at 3387.796 kb on - strand, within ECD_03250at 3387.796 kb on - strand, within ECD_03250at 3387.835 kb on - strand, within ECD_03250at 3387.904 kb on + strand, within ECD_03250at 3387.912 kb on + strand, within ECD_03250at 3387.913 kb on - strand, within ECD_03250at 3388.030 kb on + strand, within ECD_03250at 3388.039 kb on + strand, within ECD_03250at 3388.039 kb on + strand, within ECD_03250at 3388.040 kb on - strand, within ECD_03250at 3388.061 kb on - strand, within ECD_03250at 3388.061 kb on - strand, within ECD_03250at 3388.111 kb on - strand, within ECD_03250at 3388.229 kb on - strand, within ECD_03250at 3388.263 kb on + strand, within ECD_03250at 3388.263 kb on + strand, within ECD_03250at 3388.264 kb on - strand, within ECD_03250at 3388.294 kb on - strand, within ECD_03250at 3388.294 kb on - strand, within ECD_03250at 3388.294 kb on - strand, within ECD_03250at 3388.294 kb on - strand, within ECD_03250at 3388.320 kb on + strand, within ECD_03250at 3388.320 kb on + strand, within ECD_03250at 3388.321 kb on - strand, within ECD_03250at 3388.338 kb on + strand, within ECD_03250at 3388.338 kb on + strand, within ECD_03250at 3388.461 kb on + strand, within ECD_03250at 3388.558 kb on - strand, within ECD_03250at 3388.644 kb on - strand, within ECD_03250at 3388.644 kb on - strand, within ECD_03250at 3388.705 kb on + strand, within ECD_03250at 3388.705 kb on + strand, within ECD_03250at 3388.705 kb on + strand, within ECD_03250at 3388.706 kb on - strand, within ECD_03250at 3388.760 kb on - strand, within ECD_03250at 3388.768 kb on + strand, within ECD_03250at 3388.768 kb on + strand, within ECD_03250at 3388.768 kb on + strand, within ECD_03250at 3388.769 kb on - strand, within ECD_03250at 3388.812 kb on - strandat 3388.834 kb on - strandat 3388.859 kb on + strandat 3388.860 kb on - strandat 3388.925 kb on + strandat 3388.925 kb on + strandat 3388.926 kb on - strandat 3388.928 kb on + strandat 3388.929 kb on - strandat 3389.008 kb on + strandat 3389.008 kb on + strandat 3389.009 kb on - strandat 3389.054 kb on + strandat 3389.055 kb on - strandat 3389.077 kb on + strandat 3389.077 kb on + strandat 3389.077 kb on + strandat 3389.077 kb on + strandat 3389.077 kb on + strandat 3389.077 kb on + strandat 3389.078 kb on - strandat 3389.078 kb on - strandat 3389.078 kb on - strandat 3389.078 kb on - strandat 3389.078 kb on - strandat 3389.081 kb on + strandat 3389.133 kb on + strand, within ECD_03251at 3389.133 kb on + strand, within ECD_03251at 3389.133 kb on + strand, within ECD_03251at 3389.134 kb on - strand, within ECD_03251at 3389.134 kb on - strand, within ECD_03251at 3389.134 kb on - strand, within ECD_03251at 3389.134 kb on - strand, within ECD_03251at 3389.184 kb on - strand, within ECD_03251at 3389.205 kb on + strand, within ECD_03251at 3389.205 kb on + strand, within ECD_03251at 3389.205 kb on + strand, within ECD_03251at 3389.205 kb on + strand, within ECD_03251at 3389.205 kb on + strand, within ECD_03251at 3389.206 kb on - strand, within ECD_03251at 3389.206 kb on - strand, within ECD_03251at 3389.207 kb on + strand, within ECD_03251at 3389.208 kb on - strand, within ECD_03251at 3389.220 kb on + strand, within ECD_03251at 3389.231 kb on - strand, within ECD_03251at 3389.237 kb on + strand, within ECD_03251at 3389.237 kb on + strand, within ECD_03251at 3389.238 kb on - strand, within ECD_03251at 3389.243 kb on - strand, within ECD_03251at 3389.243 kb on - strand, within ECD_03251at 3389.251 kb on - strand, within ECD_03251at 3389.262 kb on + strand, within ECD_03251at 3389.263 kb on - strand, within ECD_03251at 3389.288 kb on + strand, within ECD_03251at 3389.288 kb on + strand, within ECD_03251at 3389.339 kb on + strand, within ECD_03251at 3389.340 kb on - strand, within ECD_03251at 3389.340 kb on - strand, within ECD_03251at 3389.340 kb on - strand, within ECD_03251at 3389.376 kb on - strand, within ECD_03251at 3389.435 kb on + strand, within ECD_03251at 3389.436 kb on - strand, within ECD_03251at 3389.461 kb on + strand, within ECD_03251at 3389.461 kb on + strand, within ECD_03251at 3389.464 kb on + strand, within ECD_03251at 3389.531 kb on + strand, within ECD_03251at 3389.562 kb on - strand, within ECD_03251at 3389.661 kb on + strandat 3389.764 kb on - strandat 3389.839 kb on + strand, within ECD_03252at 3389.839 kb on + strand, within ECD_03252at 3389.840 kb on - strand, within ECD_03252at 3389.930 kb on + strand, within ECD_03252at 3389.980 kb on + strand, within ECD_03252

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,385,911 - +0.8
3,385,913 - +0.4
3,385,963 - +2.9
3,385,971 - +0.5
3,385,971 - -1.1
3,386,025 + ECD_03249 0.10 -2.3
3,386,026 - ECD_03249 0.10 +1.0
3,386,026 - ECD_03249 0.10 +0.7
3,386,026 - ECD_03249 0.10 +0.3
3,386,415 - ECD_03249 0.80 -2.1
3,386,539 + -1.3
3,386,539 + -1.7
3,386,539 + -3.6
3,386,539 + -1.0
3,386,539 + -2.2
3,386,539 + -2.7
3,386,540 - -0.1
3,386,540 - +1.0
3,386,540 - -0.4
3,386,540 - -0.3
3,386,540 - -0.4
3,386,624 - +0.4
3,386,690 + +0.3
3,386,713 + +0.5
3,386,714 - -2.3
3,386,740 + -0.1
3,386,794 + +0.7
3,386,794 + +1.8
3,386,795 - +0.1
3,386,795 - +0.5
3,386,795 - -0.2
3,386,795 - -1.6
3,386,830 + +0.3
3,386,830 + +0.7
3,386,831 - -0.2
3,386,834 + -1.4
3,386,834 + -1.4
3,386,834 + -0.1
3,386,835 - -0.6
3,386,835 - +0.2
3,386,835 - +0.6
3,386,835 - -1.6
3,386,835 - -0.3
3,386,835 - +0.6
3,386,896 - -3.4
3,386,914 - -0.2
3,386,914 - +0.2
3,386,999 - +2.0
3,387,036 + -0.8
3,387,131 - ECD_03250 0.13 -1.0
3,387,131 - ECD_03250 0.13 -3.3
3,387,177 - ECD_03250 0.15 -0.2
3,387,180 - ECD_03250 0.15 -1.8
3,387,192 + ECD_03250 0.16 +1.4
3,387,224 + ECD_03250 0.18 -0.0
3,387,225 - ECD_03250 0.18 -1.1
3,387,225 - ECD_03250 0.18 +0.8
3,387,225 - ECD_03250 0.18 -0.0
3,387,225 - ECD_03250 0.18 +1.1
3,387,281 - ECD_03250 0.20 -0.7
3,387,311 + ECD_03250 0.22 -0.2
3,387,312 - ECD_03250 0.22 +1.4
3,387,312 - ECD_03250 0.22 -0.5
3,387,312 - ECD_03250 0.22 -1.8
3,387,399 + ECD_03250 0.26 +1.5
3,387,431 + ECD_03250 0.27 -1.9
3,387,522 + ECD_03250 0.32 +0.3
3,387,522 + ECD_03250 0.32 -0.8
3,387,523 - ECD_03250 0.32 +0.1
3,387,737 + ECD_03250 0.42 +1.6
3,387,737 + ECD_03250 0.42 -0.9
3,387,737 + ECD_03250 0.42 +0.9
3,387,738 - ECD_03250 0.42 +1.4
3,387,738 - ECD_03250 0.42 +0.4
3,387,738 - ECD_03250 0.42 +0.6
3,387,738 - ECD_03250 0.42 +0.4
3,387,738 - ECD_03250 0.42 -0.3
3,387,738 - ECD_03250 0.42 +0.5
3,387,775 + ECD_03250 0.43 +0.6
3,387,776 - ECD_03250 0.43 +1.1
3,387,779 + ECD_03250 0.44 -1.1
3,387,780 - ECD_03250 0.44 -3.3
3,387,780 - ECD_03250 0.44 -0.3
3,387,780 - ECD_03250 0.44 -0.4
3,387,780 - ECD_03250 0.44 +1.6
3,387,780 - ECD_03250 0.44 +0.3
3,387,780 - ECD_03250 0.44 +1.9
3,387,795 + ECD_03250 0.44 +1.4
3,387,795 + ECD_03250 0.44 -0.0
3,387,795 + ECD_03250 0.44 -0.5
3,387,796 - ECD_03250 0.44 -2.0
3,387,796 - ECD_03250 0.44 +2.5
3,387,796 - ECD_03250 0.44 +0.6
3,387,835 - ECD_03250 0.46 -0.8
3,387,904 + ECD_03250 0.49 +1.0
3,387,912 + ECD_03250 0.50 -0.6
3,387,913 - ECD_03250 0.50 -0.1
3,388,030 + ECD_03250 0.55 +0.3
3,388,039 + ECD_03250 0.56 -1.7
3,388,039 + ECD_03250 0.56 -1.8
3,388,040 - ECD_03250 0.56 +0.7
3,388,061 - ECD_03250 0.57 -0.3
3,388,061 - ECD_03250 0.57 -0.1
3,388,111 - ECD_03250 0.59 -1.1
3,388,229 - ECD_03250 0.65 -1.4
3,388,263 + ECD_03250 0.66 +0.0
3,388,263 + ECD_03250 0.66 +0.5
3,388,264 - ECD_03250 0.66 +1.1
3,388,294 - ECD_03250 0.68 -1.2
3,388,294 - ECD_03250 0.68 -0.7
3,388,294 - ECD_03250 0.68 +0.5
3,388,294 - ECD_03250 0.68 -0.5
3,388,320 + ECD_03250 0.69 -1.9
3,388,320 + ECD_03250 0.69 +0.0
3,388,321 - ECD_03250 0.69 -1.1
3,388,338 + ECD_03250 0.70 +0.5
3,388,338 + ECD_03250 0.70 -0.1
3,388,461 + ECD_03250 0.75 +1.0
3,388,558 - ECD_03250 0.80 +0.8
3,388,644 - ECD_03250 0.84 -0.3
3,388,644 - ECD_03250 0.84 +0.2
3,388,705 + ECD_03250 0.87 +1.8
3,388,705 + ECD_03250 0.87 -0.1
3,388,705 + ECD_03250 0.87 -1.0
3,388,706 - ECD_03250 0.87 -0.5
3,388,760 - ECD_03250 0.89 -0.4
3,388,768 + ECD_03250 0.90 +0.8
3,388,768 + ECD_03250 0.90 -2.2
3,388,768 + ECD_03250 0.90 -1.1
3,388,769 - ECD_03250 0.90 +0.2
3,388,812 - -1.3
3,388,834 - +0.6
3,388,859 + -0.8
3,388,860 - +0.6
3,388,925 + -0.3
3,388,925 + +0.7
3,388,926 - -0.4
3,388,928 + -0.2
3,388,929 - -0.5
3,389,008 + +0.1
3,389,008 + +0.5
3,389,009 - +1.7
3,389,054 + -0.3
3,389,055 - -0.3
3,389,077 + -1.6
3,389,077 + -1.4
3,389,077 + -3.5
3,389,077 + +1.1
3,389,077 + -0.2
3,389,077 + +0.8
3,389,078 - +1.7
3,389,078 - +1.0
3,389,078 - -2.6
3,389,078 - -0.9
3,389,078 - -0.1
3,389,081 + +0.6
3,389,133 + ECD_03251 0.13 -1.6
3,389,133 + ECD_03251 0.13 +0.2
3,389,133 + ECD_03251 0.13 +0.9
3,389,134 - ECD_03251 0.13 -0.2
3,389,134 - ECD_03251 0.13 -1.0
3,389,134 - ECD_03251 0.13 +0.0
3,389,134 - ECD_03251 0.13 +0.3
3,389,184 - ECD_03251 0.20 -0.4
3,389,205 + ECD_03251 0.23 -0.8
3,389,205 + ECD_03251 0.23 -0.2
3,389,205 + ECD_03251 0.23 -0.8
3,389,205 + ECD_03251 0.23 -2.0
3,389,205 + ECD_03251 0.23 +0.9
3,389,206 - ECD_03251 0.23 -0.3
3,389,206 - ECD_03251 0.23 +0.5
3,389,207 + ECD_03251 0.24 +0.3
3,389,208 - ECD_03251 0.24 -1.8
3,389,220 + ECD_03251 0.26 +0.1
3,389,231 - ECD_03251 0.27 +0.7
3,389,237 + ECD_03251 0.28 +0.3
3,389,237 + ECD_03251 0.28 -0.9
3,389,238 - ECD_03251 0.28 +0.4
3,389,243 - ECD_03251 0.29 +1.5
3,389,243 - ECD_03251 0.29 -0.3
3,389,251 - ECD_03251 0.30 -0.2
3,389,262 + ECD_03251 0.32 -0.5
3,389,263 - ECD_03251 0.32 +1.6
3,389,288 + ECD_03251 0.36 -0.4
3,389,288 + ECD_03251 0.36 -0.1
3,389,339 + ECD_03251 0.43 +0.6
3,389,340 - ECD_03251 0.43 -0.2
3,389,340 - ECD_03251 0.43 -0.4
3,389,340 - ECD_03251 0.43 +1.3
3,389,376 - ECD_03251 0.49 +0.0
3,389,435 + ECD_03251 0.58 -1.4
3,389,436 - ECD_03251 0.58 -2.1
3,389,461 + ECD_03251 0.62 +0.4
3,389,461 + ECD_03251 0.62 +0.6
3,389,464 + ECD_03251 0.62 +0.6
3,389,531 + ECD_03251 0.72 +0.7
3,389,562 - ECD_03251 0.77 -1.6
3,389,661 + -0.0
3,389,764 - -0.3
3,389,839 + ECD_03252 0.28 +1.2
3,389,839 + ECD_03252 0.28 +0.7
3,389,840 - ECD_03252 0.28 -1.1
3,389,930 + ECD_03252 0.50 -0.0
3,389,980 + ECD_03252 0.63 +2.0

Or see this region's nucleotide sequence