Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03219 and ECD_03220 are separated by 246 nucleotides ECD_03220 and ECD_03221 are separated by 294 nucleotides ECD_03221 and ECD_03222 are separated by 20 nucleotides
ECD_03219: ECD_03219 - fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase, at 3,357,429 to 3,358,802
_03219
ECD_03220: ECD_03220 - small lipoprotein, at 3,359,049 to 3,359,216
_03220
ECD_03221: ECD_03221 - putative fructoselysine transporter, at 3,359,511 to 3,360,848
_03221
ECD_03222: ECD_03222 - fructoselysine-6-P-deglycase, at 3,360,869 to 3,361,891
_03222
Position (kb)
3359
3360
3361 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3358.569 kb on + strand, within ECD_03219 at 3358.569 kb on + strand, within ECD_03219 at 3358.570 kb on - strand, within ECD_03219 at 3358.746 kb on - strand at 3358.801 kb on - strand at 3359.108 kb on + strand, within ECD_03220 at 3359.108 kb on + strand, within ECD_03220 at 3359.282 kb on + strand at 3359.293 kb on - strand at 3359.332 kb on + strand at 3359.350 kb on + strand at 3359.479 kb on + strand at 3359.487 kb on - strand at 3359.487 kb on - strand at 3359.505 kb on - strand at 3359.599 kb on + strand at 3359.600 kb on - strand at 3359.642 kb on + strand at 3359.698 kb on - strand, within ECD_03221 at 3359.707 kb on + strand, within ECD_03221 at 3359.708 kb on - strand, within ECD_03221 at 3359.708 kb on - strand, within ECD_03221 at 3359.740 kb on - strand, within ECD_03221 at 3359.924 kb on + strand, within ECD_03221 at 3359.925 kb on - strand, within ECD_03221 at 3359.925 kb on - strand, within ECD_03221 at 3359.932 kb on + strand, within ECD_03221 at 3359.933 kb on - strand, within ECD_03221 at 3359.933 kb on - strand, within ECD_03221 at 3359.974 kb on + strand, within ECD_03221 at 3359.979 kb on - strand, within ECD_03221 at 3359.979 kb on - strand, within ECD_03221 at 3359.979 kb on - strand, within ECD_03221 at 3360.035 kb on + strand, within ECD_03221 at 3360.093 kb on - strand, within ECD_03221 at 3360.132 kb on + strand, within ECD_03221 at 3360.149 kb on + strand, within ECD_03221 at 3360.149 kb on + strand, within ECD_03221 at 3360.149 kb on + strand, within ECD_03221 at 3360.150 kb on - strand, within ECD_03221 at 3360.150 kb on - strand, within ECD_03221 at 3360.157 kb on - strand, within ECD_03221 at 3360.158 kb on + strand, within ECD_03221 at 3360.173 kb on + strand, within ECD_03221 at 3360.414 kb on + strand, within ECD_03221 at 3360.489 kb on + strand, within ECD_03221 at 3360.490 kb on - strand, within ECD_03221 at 3360.605 kb on + strand, within ECD_03221 at 3360.762 kb on - strand at 3360.786 kb on - strand at 3360.802 kb on - strand at 3360.821 kb on + strand at 3360.853 kb on - strand at 3360.853 kb on - strand at 3360.916 kb on + strand at 3360.917 kb on - strand at 3361.006 kb on + strand, within ECD_03222 at 3361.091 kb on + strand, within ECD_03222 at 3361.092 kb on - strand, within ECD_03222 at 3361.172 kb on + strand, within ECD_03222 at 3361.295 kb on + strand, within ECD_03222 at 3361.338 kb on - strand, within ECD_03222 at 3361.502 kb on + strand, within ECD_03222 at 3361.539 kb on - strand, within ECD_03222 at 3361.554 kb on + strand, within ECD_03222 at 3361.554 kb on + strand, within ECD_03222 at 3361.554 kb on + strand, within ECD_03222 at 3361.555 kb on - strand, within ECD_03222 at 3361.820 kb on + strand at 3361.820 kb on + strand at 3361.820 kb on + strand at 3361.823 kb on + strand at 3361.823 kb on + strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.824 kb on - strand at 3361.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,358,569 + ECD_03219 0.83 +0.3 3,358,569 + ECD_03219 0.83 -1.3 3,358,570 - ECD_03219 0.83 +1.8 3,358,746 - +0.8 3,358,801 - +1.4 3,359,108 + ECD_03220 0.35 +0.7 3,359,108 + ECD_03220 0.35 +0.4 3,359,282 + -0.1 3,359,293 - -0.3 3,359,332 + -0.7 3,359,350 + +0.8 3,359,479 + -1.4 3,359,487 - -1.8 3,359,487 - -3.1 3,359,505 - +1.6 3,359,599 + -0.3 3,359,600 - -0.0 3,359,642 + -0.3 3,359,698 - ECD_03221 0.14 +0.3 3,359,707 + ECD_03221 0.15 -1.9 3,359,708 - ECD_03221 0.15 -1.1 3,359,708 - ECD_03221 0.15 +0.3 3,359,740 - ECD_03221 0.17 -1.5 3,359,924 + ECD_03221 0.31 -1.3 3,359,925 - ECD_03221 0.31 -0.4 3,359,925 - ECD_03221 0.31 -2.4 3,359,932 + ECD_03221 0.31 -1.7 3,359,933 - ECD_03221 0.32 -1.1 3,359,933 - ECD_03221 0.32 +0.1 3,359,974 + ECD_03221 0.35 -2.0 3,359,979 - ECD_03221 0.35 -0.2 3,359,979 - ECD_03221 0.35 -2.4 3,359,979 - ECD_03221 0.35 -0.9 3,360,035 + ECD_03221 0.39 -1.5 3,360,093 - ECD_03221 0.43 -0.7 3,360,132 + ECD_03221 0.46 +0.2 3,360,149 + ECD_03221 0.48 +0.3 3,360,149 + ECD_03221 0.48 -0.7 3,360,149 + ECD_03221 0.48 -1.6 3,360,150 - ECD_03221 0.48 -0.4 3,360,150 - ECD_03221 0.48 +0.2 3,360,157 - ECD_03221 0.48 -0.4 3,360,158 + ECD_03221 0.48 +0.1 3,360,173 + ECD_03221 0.49 +0.2 3,360,414 + ECD_03221 0.67 -0.3 3,360,489 + ECD_03221 0.73 -0.9 3,360,490 - ECD_03221 0.73 -1.1 3,360,605 + ECD_03221 0.82 -0.6 3,360,762 - -1.9 3,360,786 - -1.2 3,360,802 - +0.7 3,360,821 + -0.6 3,360,853 - +0.3 3,360,853 - +0.2 3,360,916 + -2.6 3,360,917 - -1.0 3,361,006 + ECD_03222 0.13 +0.8 3,361,091 + ECD_03222 0.22 -0.9 3,361,092 - ECD_03222 0.22 -0.8 3,361,172 + ECD_03222 0.30 +0.0 3,361,295 + ECD_03222 0.42 +0.3 3,361,338 - ECD_03222 0.46 +0.7 3,361,502 + ECD_03222 0.62 +0.2 3,361,539 - ECD_03222 0.65 -0.0 3,361,554 + ECD_03222 0.67 +0.4 3,361,554 + ECD_03222 0.67 -1.2 3,361,554 + ECD_03222 0.67 +0.4 3,361,555 - ECD_03222 0.67 -1.7 3,361,820 + -0.2 3,361,820 + -2.8 3,361,820 + +0.3 3,361,823 + +0.2 3,361,823 + -0.1 3,361,824 - -0.4 3,361,824 - -0.4 3,361,824 - +0.7 3,361,824 - -0.4 3,361,824 - -0.3 3,361,824 - +1.1 3,361,824 - -2.0 3,361,831 + +0.8
Or see this region's nucleotide sequence