Strain Fitness in Escherichia coli BL21 around ECD_03221

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03219 and ECD_03220 are separated by 246 nucleotidesECD_03220 and ECD_03221 are separated by 294 nucleotidesECD_03221 and ECD_03222 are separated by 20 nucleotides ECD_03219: ECD_03219 - fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase, at 3,357,429 to 3,358,802 _03219 ECD_03220: ECD_03220 - small lipoprotein, at 3,359,049 to 3,359,216 _03220 ECD_03221: ECD_03221 - putative fructoselysine transporter, at 3,359,511 to 3,360,848 _03221 ECD_03222: ECD_03222 - fructoselysine-6-P-deglycase, at 3,360,869 to 3,361,891 _03222 Position (kb) 3359 3360 3361Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3358.569 kb on + strand, within ECD_03219at 3358.569 kb on + strand, within ECD_03219at 3358.570 kb on - strand, within ECD_03219at 3358.746 kb on - strandat 3358.801 kb on - strandat 3359.108 kb on + strand, within ECD_03220at 3359.108 kb on + strand, within ECD_03220at 3359.282 kb on + strandat 3359.293 kb on - strandat 3359.332 kb on + strandat 3359.350 kb on + strandat 3359.479 kb on + strandat 3359.487 kb on - strandat 3359.487 kb on - strandat 3359.505 kb on - strandat 3359.599 kb on + strandat 3359.600 kb on - strandat 3359.642 kb on + strandat 3359.698 kb on - strand, within ECD_03221at 3359.707 kb on + strand, within ECD_03221at 3359.708 kb on - strand, within ECD_03221at 3359.708 kb on - strand, within ECD_03221at 3359.740 kb on - strand, within ECD_03221at 3359.924 kb on + strand, within ECD_03221at 3359.925 kb on - strand, within ECD_03221at 3359.925 kb on - strand, within ECD_03221at 3359.932 kb on + strand, within ECD_03221at 3359.933 kb on - strand, within ECD_03221at 3359.933 kb on - strand, within ECD_03221at 3359.974 kb on + strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3359.979 kb on - strand, within ECD_03221at 3360.035 kb on + strand, within ECD_03221at 3360.093 kb on - strand, within ECD_03221at 3360.132 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.149 kb on + strand, within ECD_03221at 3360.150 kb on - strand, within ECD_03221at 3360.150 kb on - strand, within ECD_03221at 3360.157 kb on - strand, within ECD_03221at 3360.158 kb on + strand, within ECD_03221at 3360.173 kb on + strand, within ECD_03221at 3360.414 kb on + strand, within ECD_03221at 3360.489 kb on + strand, within ECD_03221at 3360.490 kb on - strand, within ECD_03221at 3360.605 kb on + strand, within ECD_03221at 3360.762 kb on - strandat 3360.786 kb on - strandat 3360.802 kb on - strandat 3360.821 kb on + strandat 3360.853 kb on - strandat 3360.853 kb on - strandat 3360.916 kb on + strandat 3360.917 kb on - strandat 3361.006 kb on + strand, within ECD_03222at 3361.091 kb on + strand, within ECD_03222at 3361.092 kb on - strand, within ECD_03222at 3361.172 kb on + strand, within ECD_03222at 3361.295 kb on + strand, within ECD_03222at 3361.338 kb on - strand, within ECD_03222at 3361.502 kb on + strand, within ECD_03222at 3361.539 kb on - strand, within ECD_03222at 3361.554 kb on + strand, within ECD_03222at 3361.554 kb on + strand, within ECD_03222at 3361.554 kb on + strand, within ECD_03222at 3361.555 kb on - strand, within ECD_03222at 3361.820 kb on + strandat 3361.820 kb on + strandat 3361.820 kb on + strandat 3361.823 kb on + strandat 3361.823 kb on + strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.824 kb on - strandat 3361.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,358,569 + ECD_03219 0.83 +0.3
3,358,569 + ECD_03219 0.83 -1.3
3,358,570 - ECD_03219 0.83 +1.8
3,358,746 - +0.8
3,358,801 - +1.4
3,359,108 + ECD_03220 0.35 +0.7
3,359,108 + ECD_03220 0.35 +0.4
3,359,282 + -0.1
3,359,293 - -0.3
3,359,332 + -0.7
3,359,350 + +0.8
3,359,479 + -1.4
3,359,487 - -1.8
3,359,487 - -3.1
3,359,505 - +1.6
3,359,599 + -0.3
3,359,600 - -0.0
3,359,642 + -0.3
3,359,698 - ECD_03221 0.14 +0.3
3,359,707 + ECD_03221 0.15 -1.9
3,359,708 - ECD_03221 0.15 -1.1
3,359,708 - ECD_03221 0.15 +0.3
3,359,740 - ECD_03221 0.17 -1.5
3,359,924 + ECD_03221 0.31 -1.3
3,359,925 - ECD_03221 0.31 -0.4
3,359,925 - ECD_03221 0.31 -2.4
3,359,932 + ECD_03221 0.31 -1.7
3,359,933 - ECD_03221 0.32 -1.1
3,359,933 - ECD_03221 0.32 +0.1
3,359,974 + ECD_03221 0.35 -2.0
3,359,979 - ECD_03221 0.35 -0.2
3,359,979 - ECD_03221 0.35 -2.4
3,359,979 - ECD_03221 0.35 -0.9
3,360,035 + ECD_03221 0.39 -1.5
3,360,093 - ECD_03221 0.43 -0.7
3,360,132 + ECD_03221 0.46 +0.2
3,360,149 + ECD_03221 0.48 +0.3
3,360,149 + ECD_03221 0.48 -0.7
3,360,149 + ECD_03221 0.48 -1.6
3,360,150 - ECD_03221 0.48 -0.4
3,360,150 - ECD_03221 0.48 +0.2
3,360,157 - ECD_03221 0.48 -0.4
3,360,158 + ECD_03221 0.48 +0.1
3,360,173 + ECD_03221 0.49 +0.2
3,360,414 + ECD_03221 0.67 -0.3
3,360,489 + ECD_03221 0.73 -0.9
3,360,490 - ECD_03221 0.73 -1.1
3,360,605 + ECD_03221 0.82 -0.6
3,360,762 - -1.9
3,360,786 - -1.2
3,360,802 - +0.7
3,360,821 + -0.6
3,360,853 - +0.3
3,360,853 - +0.2
3,360,916 + -2.6
3,360,917 - -1.0
3,361,006 + ECD_03222 0.13 +0.8
3,361,091 + ECD_03222 0.22 -0.9
3,361,092 - ECD_03222 0.22 -0.8
3,361,172 + ECD_03222 0.30 +0.0
3,361,295 + ECD_03222 0.42 +0.3
3,361,338 - ECD_03222 0.46 +0.7
3,361,502 + ECD_03222 0.62 +0.2
3,361,539 - ECD_03222 0.65 -0.0
3,361,554 + ECD_03222 0.67 +0.4
3,361,554 + ECD_03222 0.67 -1.2
3,361,554 + ECD_03222 0.67 +0.4
3,361,555 - ECD_03222 0.67 -1.7
3,361,820 + -0.2
3,361,820 + -2.8
3,361,820 + +0.3
3,361,823 + +0.2
3,361,823 + -0.1
3,361,824 - -0.4
3,361,824 - -0.4
3,361,824 - +0.7
3,361,824 - -0.4
3,361,824 - -0.3
3,361,824 - +1.1
3,361,824 - -2.0
3,361,831 + +0.8

Or see this region's nucleotide sequence