Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03216 and ECD_03217 overlap by 4 nucleotides ECD_03217 and ECD_03218 are separated by 125 nucleotides ECD_03218 and ECD_03219 are separated by 18 nucleotides
ECD_03216: ECD_03216 - nitrite reductase, large subunit, NAD(P)H-binding, at 3,353,612 to 3,356,155
_03216
ECD_03217: ECD_03217 - nitrite reductase (NADH) small subunit, at 3,356,152 to 3,356,478
_03217
ECD_03218: ECD_03218 - nitrite transporter, at 3,356,604 to 3,357,410
_03218
ECD_03219: ECD_03219 - fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase, at 3,357,429 to 3,358,802
_03219
Position (kb)
3356
3357 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3355.184 kb on - strand, within ECD_03216 at 3355.227 kb on - strand, within ECD_03216 at 3355.246 kb on + strand, within ECD_03216 at 3355.247 kb on - strand, within ECD_03216 at 3355.247 kb on - strand, within ECD_03216 at 3355.305 kb on - strand, within ECD_03216 at 3355.305 kb on - strand, within ECD_03216 at 3355.362 kb on + strand, within ECD_03216 at 3355.363 kb on - strand, within ECD_03216 at 3355.681 kb on + strand, within ECD_03216 at 3355.724 kb on + strand, within ECD_03216 at 3355.829 kb on + strand, within ECD_03216 at 3355.829 kb on + strand, within ECD_03216 at 3355.829 kb on + strand, within ECD_03216 at 3355.830 kb on - strand, within ECD_03216 at 3355.830 kb on - strand, within ECD_03216 at 3355.858 kb on + strand, within ECD_03216 at 3356.009 kb on - strand at 3356.122 kb on + strand at 3356.122 kb on + strand at 3356.123 kb on - strand at 3356.219 kb on + strand, within ECD_03217 at 3356.219 kb on + strand, within ECD_03217 at 3356.219 kb on + strand, within ECD_03217 at 3356.219 kb on + strand, within ECD_03217 at 3356.220 kb on - strand, within ECD_03217 at 3356.525 kb on - strand at 3356.528 kb on - strand at 3356.538 kb on - strand at 3356.540 kb on - strand at 3356.597 kb on + strand at 3356.712 kb on + strand, within ECD_03218 at 3356.713 kb on - strand, within ECD_03218 at 3356.970 kb on + strand, within ECD_03218 at 3356.970 kb on + strand, within ECD_03218 at 3356.970 kb on + strand, within ECD_03218 at 3356.970 kb on + strand, within ECD_03218 at 3356.970 kb on + strand, within ECD_03218 at 3356.971 kb on - strand, within ECD_03218 at 3356.971 kb on - strand, within ECD_03218 at 3356.971 kb on - strand, within ECD_03218 at 3356.971 kb on - strand, within ECD_03218 at 3356.971 kb on - strand, within ECD_03218 at 3356.973 kb on - strand, within ECD_03218 at 3357.035 kb on + strand, within ECD_03218 at 3357.149 kb on + strand, within ECD_03218 at 3357.173 kb on + strand, within ECD_03218 at 3357.198 kb on - strand, within ECD_03218 at 3357.198 kb on - strand, within ECD_03218 at 3357.302 kb on + strand, within ECD_03218 at 3357.303 kb on - strand, within ECD_03218 at 3357.303 kb on - strand, within ECD_03218 at 3357.342 kb on + strand at 3357.342 kb on + strand at 3357.343 kb on - strand at 3357.412 kb on + strand at 3357.412 kb on + strand at 3357.412 kb on + strand at 3357.412 kb on + strand at 3357.413 kb on - strand at 3357.413 kb on - strand at 3357.415 kb on + strand at 3357.415 kb on + strand at 3357.426 kb on + strand at 3357.443 kb on + strand at 3357.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,355,184 - ECD_03216 0.62 -0.1 3,355,227 - ECD_03216 0.63 -0.4 3,355,246 + ECD_03216 0.64 +0.1 3,355,247 - ECD_03216 0.64 +0.6 3,355,247 - ECD_03216 0.64 -1.8 3,355,305 - ECD_03216 0.67 -1.2 3,355,305 - ECD_03216 0.67 +0.8 3,355,362 + ECD_03216 0.69 -1.3 3,355,363 - ECD_03216 0.69 +1.5 3,355,681 + ECD_03216 0.81 -0.3 3,355,724 + ECD_03216 0.83 +0.5 3,355,829 + ECD_03216 0.87 -2.4 3,355,829 + ECD_03216 0.87 +0.4 3,355,829 + ECD_03216 0.87 -1.7 3,355,830 - ECD_03216 0.87 -0.2 3,355,830 - ECD_03216 0.87 -0.6 3,355,858 + ECD_03216 0.88 +2.6 3,356,009 - -1.2 3,356,122 + +0.2 3,356,122 + -0.4 3,356,123 - -0.1 3,356,219 + ECD_03217 0.20 +1.0 3,356,219 + ECD_03217 0.20 +0.3 3,356,219 + ECD_03217 0.20 -0.1 3,356,219 + ECD_03217 0.20 +0.1 3,356,220 - ECD_03217 0.21 +2.5 3,356,525 - +0.1 3,356,528 - -2.4 3,356,538 - +0.0 3,356,540 - +0.1 3,356,597 + +0.6 3,356,712 + ECD_03218 0.13 -0.2 3,356,713 - ECD_03218 0.14 -2.9 3,356,970 + ECD_03218 0.45 +0.2 3,356,970 + ECD_03218 0.45 +0.6 3,356,970 + ECD_03218 0.45 +1.2 3,356,970 + ECD_03218 0.45 +0.6 3,356,970 + ECD_03218 0.45 +0.4 3,356,971 - ECD_03218 0.45 -1.5 3,356,971 - ECD_03218 0.45 +0.6 3,356,971 - ECD_03218 0.45 +1.2 3,356,971 - ECD_03218 0.45 +1.6 3,356,971 - ECD_03218 0.45 -1.7 3,356,973 - ECD_03218 0.46 -0.9 3,357,035 + ECD_03218 0.53 +1.0 3,357,149 + ECD_03218 0.68 -0.2 3,357,173 + ECD_03218 0.71 -1.3 3,357,198 - ECD_03218 0.74 +0.7 3,357,198 - ECD_03218 0.74 -0.2 3,357,302 + ECD_03218 0.86 -3.6 3,357,303 - ECD_03218 0.87 +0.5 3,357,303 - ECD_03218 0.87 +0.2 3,357,342 + -0.8 3,357,342 + -0.8 3,357,343 - -2.8 3,357,412 + +0.6 3,357,412 + -0.8 3,357,412 + +0.4 3,357,412 + -0.1 3,357,413 - -1.3 3,357,413 - +0.8 3,357,415 + -2.7 3,357,415 + +0.2 3,357,426 + +0.2 3,357,443 + -2.0 3,357,443 + +0.5
Or see this region's nucleotide sequence