Strain Fitness in Escherichia coli BL21 around ECD_03177

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03176 and ECD_03177 are separated by 9 nucleotidesECD_03177 and ECD_03178 overlap by 4 nucleotides ECD_03176: ECD_03176 - general secretory pathway component, cryptic, at 3,317,547 to 3,318,563 _03176 ECD_03177: ECD_03177 - general secretory pathway component, cryptic, at 3,318,573 to 3,320,054 _03177 ECD_03178: ECD_03178 - general secretory pathway component, cryptic, at 3,320,051 to 3,321,247 _03178 Position (kb) 3318 3319 3320 3321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3317.590 kb on + strandat 3317.628 kb on + strandat 3317.674 kb on + strand, within ECD_03176at 3317.674 kb on + strand, within ECD_03176at 3317.744 kb on + strand, within ECD_03176at 3317.745 kb on - strand, within ECD_03176at 3317.750 kb on + strand, within ECD_03176at 3317.750 kb on + strand, within ECD_03176at 3317.769 kb on + strand, within ECD_03176at 3317.769 kb on + strand, within ECD_03176at 3317.772 kb on + strand, within ECD_03176at 3317.785 kb on + strand, within ECD_03176at 3317.802 kb on + strand, within ECD_03176at 3317.808 kb on + strand, within ECD_03176at 3317.808 kb on + strand, within ECD_03176at 3317.863 kb on + strand, within ECD_03176at 3317.908 kb on + strand, within ECD_03176at 3317.908 kb on + strand, within ECD_03176at 3317.909 kb on - strand, within ECD_03176at 3317.909 kb on - strand, within ECD_03176at 3317.909 kb on - strand, within ECD_03176at 3318.021 kb on + strand, within ECD_03176at 3318.022 kb on - strand, within ECD_03176at 3318.022 kb on - strand, within ECD_03176at 3318.042 kb on - strand, within ECD_03176at 3318.088 kb on + strand, within ECD_03176at 3318.128 kb on + strand, within ECD_03176at 3318.188 kb on + strand, within ECD_03176at 3318.197 kb on + strand, within ECD_03176at 3318.198 kb on - strand, within ECD_03176at 3318.201 kb on - strand, within ECD_03176at 3318.314 kb on - strand, within ECD_03176at 3318.335 kb on + strand, within ECD_03176at 3318.335 kb on + strand, within ECD_03176at 3318.336 kb on - strand, within ECD_03176at 3318.370 kb on + strand, within ECD_03176at 3318.374 kb on + strand, within ECD_03176at 3318.374 kb on + strand, within ECD_03176at 3318.375 kb on - strand, within ECD_03176at 3318.432 kb on + strand, within ECD_03176at 3318.591 kb on + strandat 3318.650 kb on + strandat 3318.651 kb on - strandat 3318.654 kb on + strandat 3318.655 kb on - strandat 3318.966 kb on + strand, within ECD_03177at 3319.052 kb on + strand, within ECD_03177at 3319.052 kb on + strand, within ECD_03177at 3319.052 kb on + strand, within ECD_03177at 3319.053 kb on - strand, within ECD_03177at 3319.053 kb on - strand, within ECD_03177at 3319.065 kb on - strand, within ECD_03177at 3319.142 kb on + strand, within ECD_03177at 3319.143 kb on - strand, within ECD_03177at 3319.143 kb on - strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.147 kb on + strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.148 kb on - strand, within ECD_03177at 3319.179 kb on + strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.180 kb on - strand, within ECD_03177at 3319.302 kb on - strand, within ECD_03177at 3319.302 kb on - strand, within ECD_03177at 3319.304 kb on + strand, within ECD_03177at 3319.305 kb on - strand, within ECD_03177at 3319.350 kb on + strand, within ECD_03177at 3319.374 kb on - strand, within ECD_03177at 3319.416 kb on + strand, within ECD_03177at 3319.417 kb on - strand, within ECD_03177at 3319.463 kb on + strand, within ECD_03177at 3319.607 kb on + strand, within ECD_03177at 3319.608 kb on - strand, within ECD_03177at 3319.774 kb on - strand, within ECD_03177at 3319.960 kb on + strandat 3319.988 kb on - strandat 3320.015 kb on + strandat 3320.058 kb on - strandat 3320.320 kb on + strand, within ECD_03178at 3320.321 kb on - strand, within ECD_03178at 3320.323 kb on + strand, within ECD_03178at 3320.343 kb on + strand, within ECD_03178at 3320.344 kb on - strand, within ECD_03178at 3320.394 kb on + strand, within ECD_03178at 3320.394 kb on + strand, within ECD_03178at 3320.395 kb on - strand, within ECD_03178at 3320.546 kb on + strand, within ECD_03178at 3320.546 kb on + strand, within ECD_03178at 3320.547 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.555 kb on - strand, within ECD_03178at 3320.564 kb on - strand, within ECD_03178at 3320.635 kb on + strand, within ECD_03178at 3320.636 kb on - strand, within ECD_03178at 3320.659 kb on + strand, within ECD_03178at 3320.660 kb on - strand, within ECD_03178at 3320.673 kb on + strand, within ECD_03178at 3320.712 kb on + strand, within ECD_03178at 3320.713 kb on - strand, within ECD_03178at 3320.713 kb on - strand, within ECD_03178at 3320.729 kb on - strand, within ECD_03178at 3320.729 kb on - strand, within ECD_03178at 3320.849 kb on + strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.850 kb on - strand, within ECD_03178at 3320.862 kb on + strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3320.867 kb on - strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.038 kb on + strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178at 3321.039 kb on - strand, within ECD_03178

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,317,590 + -0.3
3,317,628 + -2.4
3,317,674 + ECD_03176 0.12 -0.2
3,317,674 + ECD_03176 0.12 +1.2
3,317,744 + ECD_03176 0.19 -2.1
3,317,745 - ECD_03176 0.19 -0.5
3,317,750 + ECD_03176 0.20 +1.0
3,317,750 + ECD_03176 0.20 +0.6
3,317,769 + ECD_03176 0.22 +1.2
3,317,769 + ECD_03176 0.22 -1.2
3,317,772 + ECD_03176 0.22 +0.6
3,317,785 + ECD_03176 0.23 -0.1
3,317,802 + ECD_03176 0.25 -3.4
3,317,808 + ECD_03176 0.26 +0.6
3,317,808 + ECD_03176 0.26 -2.1
3,317,863 + ECD_03176 0.31 -1.6
3,317,908 + ECD_03176 0.35 +0.8
3,317,908 + ECD_03176 0.35 -0.8
3,317,909 - ECD_03176 0.36 +0.8
3,317,909 - ECD_03176 0.36 -1.2
3,317,909 - ECD_03176 0.36 -0.4
3,318,021 + ECD_03176 0.47 +0.4
3,318,022 - ECD_03176 0.47 -2.0
3,318,022 - ECD_03176 0.47 +0.5
3,318,042 - ECD_03176 0.49 -0.7
3,318,088 + ECD_03176 0.53 -0.3
3,318,128 + ECD_03176 0.57 +0.9
3,318,188 + ECD_03176 0.63 -0.1
3,318,197 + ECD_03176 0.64 +1.8
3,318,198 - ECD_03176 0.64 -0.4
3,318,201 - ECD_03176 0.64 +0.4
3,318,314 - ECD_03176 0.75 +0.6
3,318,335 + ECD_03176 0.77 -1.4
3,318,335 + ECD_03176 0.77 +1.8
3,318,336 - ECD_03176 0.78 -0.0
3,318,370 + ECD_03176 0.81 +0.5
3,318,374 + ECD_03176 0.81 -0.3
3,318,374 + ECD_03176 0.81 +0.0
3,318,375 - ECD_03176 0.81 -1.4
3,318,432 + ECD_03176 0.87 -1.2
3,318,591 + +0.2
3,318,650 + +0.3
3,318,651 - +1.0
3,318,654 + +0.1
3,318,655 - +1.2
3,318,966 + ECD_03177 0.27 -0.4
3,319,052 + ECD_03177 0.32 -0.9
3,319,052 + ECD_03177 0.32 -2.9
3,319,052 + ECD_03177 0.32 +1.4
3,319,053 - ECD_03177 0.32 -0.1
3,319,053 - ECD_03177 0.32 +0.2
3,319,065 - ECD_03177 0.33 -0.9
3,319,142 + ECD_03177 0.38 -1.1
3,319,143 - ECD_03177 0.38 -0.8
3,319,143 - ECD_03177 0.38 -0.4
3,319,147 + ECD_03177 0.39 -0.3
3,319,147 + ECD_03177 0.39 -0.6
3,319,147 + ECD_03177 0.39 +0.6
3,319,147 + ECD_03177 0.39 -1.8
3,319,147 + ECD_03177 0.39 +0.3
3,319,147 + ECD_03177 0.39 +0.5
3,319,147 + ECD_03177 0.39 +0.7
3,319,147 + ECD_03177 0.39 +0.8
3,319,148 - ECD_03177 0.39 -1.6
3,319,148 - ECD_03177 0.39 +1.1
3,319,148 - ECD_03177 0.39 -2.9
3,319,148 - ECD_03177 0.39 +0.1
3,319,148 - ECD_03177 0.39 +1.1
3,319,148 - ECD_03177 0.39 -1.1
3,319,148 - ECD_03177 0.39 +1.0
3,319,148 - ECD_03177 0.39 -0.4
3,319,148 - ECD_03177 0.39 -0.1
3,319,148 - ECD_03177 0.39 +0.7
3,319,148 - ECD_03177 0.39 +0.4
3,319,148 - ECD_03177 0.39 +0.3
3,319,148 - ECD_03177 0.39 -0.1
3,319,148 - ECD_03177 0.39 +0.3
3,319,179 + ECD_03177 0.41 -2.5
3,319,180 - ECD_03177 0.41 +0.5
3,319,180 - ECD_03177 0.41 -0.6
3,319,180 - ECD_03177 0.41 +1.6
3,319,180 - ECD_03177 0.41 -1.7
3,319,180 - ECD_03177 0.41 -1.2
3,319,302 - ECD_03177 0.49 -0.5
3,319,302 - ECD_03177 0.49 +1.3
3,319,304 + ECD_03177 0.49 +0.1
3,319,305 - ECD_03177 0.49 +0.9
3,319,350 + ECD_03177 0.52 +0.5
3,319,374 - ECD_03177 0.54 +0.8
3,319,416 + ECD_03177 0.57 -0.3
3,319,417 - ECD_03177 0.57 -0.9
3,319,463 + ECD_03177 0.60 -1.4
3,319,607 + ECD_03177 0.70 -1.2
3,319,608 - ECD_03177 0.70 +0.5
3,319,774 - ECD_03177 0.81 +0.9
3,319,960 + +2.5
3,319,988 - -0.8
3,320,015 + -0.5
3,320,058 - -0.7
3,320,320 + ECD_03178 0.22 +1.8
3,320,321 - ECD_03178 0.23 +0.3
3,320,323 + ECD_03178 0.23 -2.0
3,320,343 + ECD_03178 0.24 -2.0
3,320,344 - ECD_03178 0.24 +0.1
3,320,394 + ECD_03178 0.29 +0.3
3,320,394 + ECD_03178 0.29 +0.3
3,320,395 - ECD_03178 0.29 -1.1
3,320,546 + ECD_03178 0.41 -0.3
3,320,546 + ECD_03178 0.41 -1.0
3,320,547 - ECD_03178 0.41 -2.0
3,320,555 - ECD_03178 0.42 +0.8
3,320,555 - ECD_03178 0.42 +1.0
3,320,555 - ECD_03178 0.42 +0.5
3,320,564 - ECD_03178 0.43 -0.6
3,320,635 + ECD_03178 0.49 -0.4
3,320,636 - ECD_03178 0.49 +1.1
3,320,659 + ECD_03178 0.51 -2.4
3,320,660 - ECD_03178 0.51 -0.1
3,320,673 + ECD_03178 0.52 -0.5
3,320,712 + ECD_03178 0.55 +0.9
3,320,713 - ECD_03178 0.55 -3.0
3,320,713 - ECD_03178 0.55 +0.6
3,320,729 - ECD_03178 0.57 -2.4
3,320,729 - ECD_03178 0.57 +0.1
3,320,849 + ECD_03178 0.67 -0.4
3,320,850 - ECD_03178 0.67 -0.1
3,320,850 - ECD_03178 0.67 +3.2
3,320,850 - ECD_03178 0.67 -1.1
3,320,850 - ECD_03178 0.67 -1.1
3,320,862 + ECD_03178 0.68 +0.7
3,320,867 - ECD_03178 0.68 -0.6
3,320,867 - ECD_03178 0.68 -0.1
3,320,867 - ECD_03178 0.68 +0.0
3,321,038 + ECD_03178 0.82 -3.6
3,321,038 + ECD_03178 0.82 +1.8
3,321,038 + ECD_03178 0.82 +0.4
3,321,038 + ECD_03178 0.82 -0.7
3,321,038 + ECD_03178 0.82 +1.6
3,321,038 + ECD_03178 0.82 +0.6
3,321,039 - ECD_03178 0.83 +1.0
3,321,039 - ECD_03178 0.83 -0.1
3,321,039 - ECD_03178 0.83 -0.2
3,321,039 - ECD_03178 0.83 +0.7
3,321,039 - ECD_03178 0.83 -0.2

Or see this region's nucleotide sequence