Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03113 and ECD_03114 are separated by 10 nucleotides ECD_03114 and ECD_03115 are separated by 108 nucleotides ECD_03115 and ECD_03116 overlap by 11 nucleotides
ECD_03113: ECD_03113 - acetyl CoA carboxylase, BCCP subunit, at 3,266,592 to 3,267,062
_03113
ECD_03114: ECD_03114 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 3,267,073 to 3,268,422
_03114
ECD_03115: ECD_03115 - DUF997 family putative inner membrane protein, at 3,268,531 to 3,268,773
_03115
ECD_03116: ECD_03116 - pantothenate:sodium symporter, at 3,268,763 to 3,270,214
_03116
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3266.084 kb on + strand at 3266.089 kb on + strand at 3266.089 kb on + strand at 3266.089 kb on + strand at 3266.090 kb on - strand at 3266.090 kb on - strand at 3266.109 kb on + strand at 3266.110 kb on - strand at 3266.110 kb on - strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.162 kb on + strand at 3266.167 kb on + strand at 3266.168 kb on - strand at 3266.169 kb on + strand at 3266.227 kb on - strand at 3266.243 kb on + strand at 3266.247 kb on + strand at 3266.247 kb on + strand at 3266.247 kb on + strand at 3266.248 kb on - strand at 3266.265 kb on + strand at 3266.266 kb on - strand at 3266.278 kb on - strand at 3266.286 kb on + strand at 3266.286 kb on + strand at 3266.286 kb on + strand at 3266.290 kb on + strand at 3266.317 kb on + strand at 3266.503 kb on + strand at 3266.532 kb on + strand at 3268.420 kb on + strand at 3268.429 kb on + strand at 3268.465 kb on - strand at 3268.494 kb on + strand at 3268.494 kb on + strand at 3268.494 kb on + strand at 3268.494 kb on + strand at 3268.494 kb on + strand at 3268.495 kb on - strand at 3268.495 kb on - strand at 3268.594 kb on + strand, within ECD_03115 at 3268.621 kb on + strand, within ECD_03115 at 3268.621 kb on + strand, within ECD_03115 at 3268.647 kb on + strand, within ECD_03115 at 3268.701 kb on + strand, within ECD_03115 at 3268.701 kb on + strand, within ECD_03115 at 3268.776 kb on + strand at 3268.782 kb on + strand at 3268.796 kb on + strand at 3268.826 kb on + strand at 3268.868 kb on + strand at 3268.868 kb on + strand at 3268.869 kb on - strand at 3268.928 kb on + strand, within ECD_03116 at 3268.928 kb on + strand, within ECD_03116 at 3268.928 kb on + strand, within ECD_03116 at 3268.928 kb on + strand, within ECD_03116 at 3268.929 kb on - strand, within ECD_03116 at 3268.929 kb on - strand, within ECD_03116 at 3268.929 kb on - strand, within ECD_03116 at 3268.930 kb on + strand, within ECD_03116 at 3268.930 kb on + strand, within ECD_03116 at 3268.972 kb on + strand, within ECD_03116 at 3268.972 kb on + strand, within ECD_03116 at 3268.972 kb on + strand, within ECD_03116 at 3268.972 kb on + strand, within ECD_03116 at 3268.973 kb on - strand, within ECD_03116 at 3268.973 kb on - strand, within ECD_03116 at 3269.075 kb on + strand, within ECD_03116 at 3269.098 kb on + strand, within ECD_03116 at 3269.099 kb on - strand, within ECD_03116 at 3269.274 kb on + strand, within ECD_03116 at 3269.274 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.276 kb on + strand, within ECD_03116 at 3269.278 kb on + strand, within ECD_03116 at 3269.278 kb on + strand, within ECD_03116 at 3269.363 kb on - strand, within ECD_03116 at 3269.371 kb on - strand, within ECD_03116 at 3269.373 kb on + strand, within ECD_03116 at 3269.373 kb on + strand, within ECD_03116 at 3269.374 kb on - strand, within ECD_03116 at 3269.403 kb on + strand, within ECD_03116
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,266,084 + +0.4 3,266,089 + +0.7 3,266,089 + -1.9 3,266,089 + +0.1 3,266,090 - +0.2 3,266,090 - +0.0 3,266,109 + -0.7 3,266,110 - -0.7 3,266,110 - +0.5 3,266,162 + -0.2 3,266,162 + +1.2 3,266,162 + +0.7 3,266,162 + +1.2 3,266,162 + +0.8 3,266,162 + -1.4 3,266,167 + +0.5 3,266,168 - +0.4 3,266,169 + +0.4 3,266,227 - -0.2 3,266,243 + -1.9 3,266,247 + +1.4 3,266,247 + +0.0 3,266,247 + +0.6 3,266,248 - -0.8 3,266,265 + +0.5 3,266,266 - +0.6 3,266,278 - -2.8 3,266,286 + +0.4 3,266,286 + -0.2 3,266,286 + -0.0 3,266,290 + +1.1 3,266,317 + +0.9 3,266,503 + -2.2 3,266,532 + -1.6 3,268,420 + -2.8 3,268,429 + -0.8 3,268,465 - -3.7 3,268,494 + +0.4 3,268,494 + -0.3 3,268,494 + -1.7 3,268,494 + -2.1 3,268,494 + -0.6 3,268,495 - +0.2 3,268,495 - +0.7 3,268,594 + ECD_03115 0.26 +0.9 3,268,621 + ECD_03115 0.37 +0.0 3,268,621 + ECD_03115 0.37 +1.3 3,268,647 + ECD_03115 0.48 +0.0 3,268,701 + ECD_03115 0.70 +0.3 3,268,701 + ECD_03115 0.70 +0.2 3,268,776 + +0.9 3,268,782 + +0.8 3,268,796 + -2.0 3,268,826 + +1.1 3,268,868 + -0.0 3,268,868 + +1.1 3,268,869 - +1.2 3,268,928 + ECD_03116 0.11 -0.5 3,268,928 + ECD_03116 0.11 -0.2 3,268,928 + ECD_03116 0.11 +1.5 3,268,928 + ECD_03116 0.11 -0.0 3,268,929 - ECD_03116 0.11 +1.1 3,268,929 - ECD_03116 0.11 -0.7 3,268,929 - ECD_03116 0.11 +0.9 3,268,930 + ECD_03116 0.12 -0.2 3,268,930 + ECD_03116 0.12 +0.2 3,268,972 + ECD_03116 0.14 +0.9 3,268,972 + ECD_03116 0.14 +0.5 3,268,972 + ECD_03116 0.14 -1.5 3,268,972 + ECD_03116 0.14 -0.1 3,268,973 - ECD_03116 0.14 +0.2 3,268,973 - ECD_03116 0.14 +1.2 3,269,075 + ECD_03116 0.21 +0.1 3,269,098 + ECD_03116 0.23 -0.9 3,269,099 - ECD_03116 0.23 +0.0 3,269,274 + ECD_03116 0.35 +0.6 3,269,274 + ECD_03116 0.35 +1.5 3,269,276 + ECD_03116 0.35 +0.9 3,269,276 + ECD_03116 0.35 +0.2 3,269,276 + ECD_03116 0.35 -0.2 3,269,276 + ECD_03116 0.35 +0.4 3,269,276 + ECD_03116 0.35 +1.1 3,269,276 + ECD_03116 0.35 -3.2 3,269,278 + ECD_03116 0.35 -0.1 3,269,278 + ECD_03116 0.35 -0.7 3,269,363 - ECD_03116 0.41 -0.3 3,269,371 - ECD_03116 0.42 -2.5 3,269,373 + ECD_03116 0.42 +1.7 3,269,373 + ECD_03116 0.42 -0.8 3,269,374 - ECD_03116 0.42 -1.6 3,269,403 + ECD_03116 0.44 -0.7
Or see this region's nucleotide sequence