Strain Fitness in Escherichia coli BL21 around ECD_02928

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02927 and ECD_02928 are separated by 90 nucleotidesECD_02928 and ECD_02929 are separated by 104 nucleotidesECD_02929 and ECD_02930 are separated by 12 nucleotides ECD_02927: ECD_02927 - undecaprenyl pyrophosphate phosphatase, at 3,069,391 to 3,070,212 _02927 ECD_02928: ECD_02928 - dihydroneopterin aldolase and dihydroneopterin triphosphate 2'-epimerase, at 3,070,303 to 3,070,671 _02928 ECD_02929: ECD_02929 - putative glycerol-3-phosphate acyltransferase, at 3,070,776 to 3,071,393 _02929 ECD_02930: ECD_02930 - transcriptional activator of ttdABT, at 3,071,406 to 3,072,338 _02930 Position (kb) 3070 3071Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3069.407 kb on + strandat 3069.408 kb on - strandat 3069.408 kb on - strandat 3069.408 kb on - strandat 3069.427 kb on - strandat 3069.738 kb on + strand, within ECD_02927at 3069.739 kb on - strand, within ECD_02927at 3069.752 kb on + strand, within ECD_02927at 3069.753 kb on - strand, within ECD_02927at 3069.753 kb on - strand, within ECD_02927at 3069.760 kb on - strand, within ECD_02927at 3069.843 kb on - strand, within ECD_02927at 3069.843 kb on - strand, within ECD_02927at 3069.853 kb on + strand, within ECD_02927at 3069.873 kb on + strand, within ECD_02927at 3069.874 kb on - strand, within ECD_02927at 3070.031 kb on - strand, within ECD_02927at 3070.031 kb on - strand, within ECD_02927at 3070.034 kb on - strand, within ECD_02927at 3070.122 kb on + strand, within ECD_02927at 3070.123 kb on - strand, within ECD_02927at 3070.178 kb on - strandat 3070.231 kb on + strandat 3070.263 kb on + strandat 3070.263 kb on + strandat 3070.275 kb on - strandat 3070.276 kb on + strandat 3070.726 kb on - strandat 3070.726 kb on - strandat 3070.729 kb on - strandat 3070.775 kb on + strandat 3070.775 kb on + strandat 3070.775 kb on + strandat 3070.776 kb on - strandat 3070.776 kb on - strandat 3070.776 kb on - strandat 3070.776 kb on - strandat 3070.776 kb on - strandat 3070.776 kb on - strandat 3070.915 kb on + strand, within ECD_02929at 3070.915 kb on + strand, within ECD_02929at 3070.916 kb on - strand, within ECD_02929at 3070.916 kb on - strand, within ECD_02929at 3070.920 kb on - strand, within ECD_02929at 3070.942 kb on + strand, within ECD_02929at 3071.002 kb on + strand, within ECD_02929at 3071.003 kb on - strand, within ECD_02929at 3071.029 kb on + strand, within ECD_02929at 3071.029 kb on + strand, within ECD_02929at 3071.030 kb on - strand, within ECD_02929at 3071.030 kb on - strand, within ECD_02929at 3071.030 kb on - strand, within ECD_02929at 3071.179 kb on + strand, within ECD_02929at 3071.179 kb on + strand, within ECD_02929at 3071.180 kb on - strand, within ECD_02929at 3071.180 kb on - strand, within ECD_02929at 3071.236 kb on - strand, within ECD_02929at 3071.250 kb on - strand, within ECD_02929at 3071.407 kb on + strandat 3071.407 kb on + strandat 3071.529 kb on - strand, within ECD_02930at 3071.615 kb on + strand, within ECD_02930at 3071.616 kb on - strand, within ECD_02930at 3071.616 kb on - strand, within ECD_02930

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,069,407 + -0.6
3,069,408 - -1.6
3,069,408 - +0.3
3,069,408 - +0.3
3,069,427 - -0.6
3,069,738 + ECD_02927 0.42 +0.1
3,069,739 - ECD_02927 0.42 -2.4
3,069,752 + ECD_02927 0.44 +0.2
3,069,753 - ECD_02927 0.44 -1.2
3,069,753 - ECD_02927 0.44 -0.9
3,069,760 - ECD_02927 0.45 -2.8
3,069,843 - ECD_02927 0.55 +0.8
3,069,843 - ECD_02927 0.55 -2.3
3,069,853 + ECD_02927 0.56 -0.9
3,069,873 + ECD_02927 0.59 +0.1
3,069,874 - ECD_02927 0.59 -1.3
3,070,031 - ECD_02927 0.78 +1.2
3,070,031 - ECD_02927 0.78 +0.6
3,070,034 - ECD_02927 0.78 -1.5
3,070,122 + ECD_02927 0.89 -1.8
3,070,123 - ECD_02927 0.89 +1.2
3,070,178 - +0.3
3,070,231 + +0.3
3,070,263 + -0.0
3,070,263 + -0.7
3,070,275 - +1.9
3,070,276 + +0.4
3,070,726 - -1.7
3,070,726 - +0.2
3,070,729 - +0.5
3,070,775 + +0.5
3,070,775 + -0.6
3,070,775 + -0.3
3,070,776 - -1.3
3,070,776 - +0.7
3,070,776 - +2.4
3,070,776 - -1.5
3,070,776 - -1.7
3,070,776 - +0.1
3,070,915 + ECD_02929 0.22 +0.2
3,070,915 + ECD_02929 0.22 -1.8
3,070,916 - ECD_02929 0.23 +1.6
3,070,916 - ECD_02929 0.23 -0.2
3,070,920 - ECD_02929 0.23 +0.6
3,070,942 + ECD_02929 0.27 +1.0
3,071,002 + ECD_02929 0.37 -0.1
3,071,003 - ECD_02929 0.37 -1.0
3,071,029 + ECD_02929 0.41 -0.5
3,071,029 + ECD_02929 0.41 -2.1
3,071,030 - ECD_02929 0.41 -0.8
3,071,030 - ECD_02929 0.41 -0.4
3,071,030 - ECD_02929 0.41 +0.4
3,071,179 + ECD_02929 0.65 -1.8
3,071,179 + ECD_02929 0.65 -2.8
3,071,180 - ECD_02929 0.65 -1.1
3,071,180 - ECD_02929 0.65 -1.3
3,071,236 - ECD_02929 0.74 -0.2
3,071,250 - ECD_02929 0.77 +0.1
3,071,407 + -0.4
3,071,407 + -0.5
3,071,529 - ECD_02930 0.13 +0.8
3,071,615 + ECD_02930 0.22 -1.1
3,071,616 - ECD_02930 0.23 +0.2
3,071,616 - ECD_02930 0.23 -0.1

Or see this region's nucleotide sequence