Strain Fitness in Escherichia coli BL21 around ECD_02688

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02687 and ECD_02688 overlap by 14 nucleotidesECD_02688 and ECD_02689 are separated by 128 nucleotides ECD_02687: ECD_02687 - transcriptional activator of lysA; autorepressor, at 2,817,303 to 2,818,238 _02687 ECD_02688: ECD_02688 - Asp/Glu_racemase family protein, at 2,818,225 to 2,818,917 _02688 ECD_02689: ECD_02689 - arabinose transporter, at 2,819,046 to 2,820,464 _02689 Position (kb) 2818 2819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2817.249 kb on + strandat 2817.302 kb on - strandat 2817.319 kb on + strandat 2817.320 kb on - strandat 2817.320 kb on - strandat 2817.386 kb on - strandat 2817.463 kb on + strand, within ECD_02687at 2817.464 kb on - strand, within ECD_02687at 2817.475 kb on + strand, within ECD_02687at 2817.476 kb on - strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.593 kb on + strand, within ECD_02687at 2817.594 kb on - strand, within ECD_02687at 2817.676 kb on + strand, within ECD_02687at 2817.676 kb on + strand, within ECD_02687at 2817.677 kb on - strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.680 kb on + strand, within ECD_02687at 2817.681 kb on - strand, within ECD_02687at 2817.703 kb on + strand, within ECD_02687at 2817.704 kb on - strand, within ECD_02687at 2817.739 kb on + strand, within ECD_02687at 2817.762 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.800 kb on - strand, within ECD_02687at 2817.850 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.882 kb on + strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.883 kb on - strand, within ECD_02687at 2817.909 kb on + strand, within ECD_02687at 2817.931 kb on + strand, within ECD_02687at 2817.931 kb on + strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.932 kb on - strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.935 kb on + strand, within ECD_02687at 2817.936 kb on - strand, within ECD_02687at 2817.967 kb on + strand, within ECD_02687at 2817.967 kb on + strand, within ECD_02687at 2818.019 kb on + strand, within ECD_02687at 2818.019 kb on + strand, within ECD_02687at 2818.048 kb on + strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.054 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.089 kb on - strand, within ECD_02687at 2818.160 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.171 kb on + strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.172 kb on - strandat 2818.211 kb on + strandat 2818.211 kb on + strandat 2818.212 kb on - strandat 2818.226 kb on + strandat 2818.236 kb on + strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.237 kb on - strandat 2818.386 kb on - strand, within ECD_02688at 2818.389 kb on - strand, within ECD_02688at 2818.408 kb on - strand, within ECD_02688at 2818.477 kb on - strand, within ECD_02688at 2818.538 kb on + strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.539 kb on - strand, within ECD_02688at 2818.612 kb on + strand, within ECD_02688at 2818.613 kb on - strand, within ECD_02688at 2818.656 kb on + strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.657 kb on - strand, within ECD_02688at 2818.666 kb on - strand, within ECD_02688at 2818.671 kb on + strand, within ECD_02688at 2818.672 kb on - strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.675 kb on + strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.676 kb on - strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.683 kb on + strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.684 kb on - strand, within ECD_02688at 2818.705 kb on + strand, within ECD_02688at 2818.743 kb on + strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.775 kb on - strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.794 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.798 kb on + strand, within ECD_02688at 2818.799 kb on - strand, within ECD_02688at 2818.840 kb on - strand, within ECD_02688at 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.853 kb on - strandat 2818.862 kb on + strandat 2818.862 kb on + strandat 2818.865 kb on + strandat 2818.999 kb on + strandat 2819.000 kb on - strandat 2819.000 kb on - strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.023 kb on + strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.024 kb on - strandat 2819.096 kb on + strandat 2819.097 kb on - strandat 2819.097 kb on - strandat 2819.173 kb on + strandat 2819.240 kb on + strand, within ECD_02689at 2819.273 kb on + strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.274 kb on - strand, within ECD_02689at 2819.277 kb on - strand, within ECD_02689at 2819.360 kb on + strand, within ECD_02689at 2819.360 kb on + strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.361 kb on - strand, within ECD_02689at 2819.438 kb on - strand, within ECD_02689at 2819.438 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.508 kb on - strand, within ECD_02689at 2819.543 kb on + strand, within ECD_02689at 2819.626 kb on + strand, within ECD_02689at 2819.629 kb on + strand, within ECD_02689at 2819.629 kb on + strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.630 kb on - strand, within ECD_02689at 2819.706 kb on - strand, within ECD_02689at 2819.718 kb on - strand, within ECD_02689at 2819.807 kb on + strand, within ECD_02689at 2819.807 kb on + strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.808 kb on - strand, within ECD_02689at 2819.815 kb on - strand, within ECD_02689at 2819.831 kb on + strand, within ECD_02689at 2819.832 kb on - strand, within ECD_02689

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,817,249 + +2.5
2,817,302 - +1.0
2,817,319 + -0.0
2,817,320 - -0.7
2,817,320 - +0.5
2,817,386 - +0.5
2,817,463 + ECD_02687 0.17 -1.1
2,817,464 - ECD_02687 0.17 -2.2
2,817,475 + ECD_02687 0.18 -0.3
2,817,476 - ECD_02687 0.18 -0.6
2,817,593 + ECD_02687 0.31 -0.8
2,817,593 + ECD_02687 0.31 -1.3
2,817,593 + ECD_02687 0.31 -1.3
2,817,594 - ECD_02687 0.31 +1.3
2,817,676 + ECD_02687 0.40 -2.3
2,817,676 + ECD_02687 0.40 -0.4
2,817,677 - ECD_02687 0.40 +0.2
2,817,680 + ECD_02687 0.40 +1.7
2,817,680 + ECD_02687 0.40 -0.1
2,817,680 + ECD_02687 0.40 +0.4
2,817,680 + ECD_02687 0.40 -0.4
2,817,681 - ECD_02687 0.40 +1.1
2,817,703 + ECD_02687 0.43 -0.4
2,817,704 - ECD_02687 0.43 +0.3
2,817,739 + ECD_02687 0.47 -0.0
2,817,762 - ECD_02687 0.49 -0.5
2,817,800 - ECD_02687 0.53 -0.4
2,817,800 - ECD_02687 0.53 +0.0
2,817,800 - ECD_02687 0.53 -0.5
2,817,850 + ECD_02687 0.58 -0.1
2,817,882 + ECD_02687 0.62 -3.0
2,817,882 + ECD_02687 0.62 +0.0
2,817,882 + ECD_02687 0.62 +2.7
2,817,882 + ECD_02687 0.62 +0.5
2,817,882 + ECD_02687 0.62 -0.4
2,817,882 + ECD_02687 0.62 -0.7
2,817,882 + ECD_02687 0.62 -1.0
2,817,883 - ECD_02687 0.62 +0.6
2,817,883 - ECD_02687 0.62 +1.2
2,817,883 - ECD_02687 0.62 -0.6
2,817,909 + ECD_02687 0.65 -0.5
2,817,931 + ECD_02687 0.67 +0.1
2,817,931 + ECD_02687 0.67 -0.1
2,817,932 - ECD_02687 0.67 -2.4
2,817,932 - ECD_02687 0.67 -2.2
2,817,932 - ECD_02687 0.67 -0.3
2,817,935 + ECD_02687 0.68 +0.1
2,817,935 + ECD_02687 0.68 -1.3
2,817,935 + ECD_02687 0.68 -0.0
2,817,935 + ECD_02687 0.68 -1.9
2,817,936 - ECD_02687 0.68 +1.0
2,817,967 + ECD_02687 0.71 +0.8
2,817,967 + ECD_02687 0.71 +0.8
2,818,019 + ECD_02687 0.76 +0.2
2,818,019 + ECD_02687 0.76 +0.4
2,818,048 + ECD_02687 0.80 +0.6
2,818,054 - ECD_02687 0.80 -1.6
2,818,054 - ECD_02687 0.80 -1.0
2,818,054 - ECD_02687 0.80 -2.1
2,818,089 - ECD_02687 0.84 -0.1
2,818,089 - ECD_02687 0.84 -0.2
2,818,160 + -1.8
2,818,171 + -0.3
2,818,171 + -0.7
2,818,171 + +1.2
2,818,171 + -0.4
2,818,172 - -0.9
2,818,172 - +1.3
2,818,172 - +0.3
2,818,211 + +1.3
2,818,211 + -1.1
2,818,212 - +0.1
2,818,226 + -1.3
2,818,236 + -1.7
2,818,237 - -0.5
2,818,237 - +2.5
2,818,237 - +2.2
2,818,237 - +1.3
2,818,237 - -0.1
2,818,386 - ECD_02688 0.23 +0.4
2,818,389 - ECD_02688 0.24 -0.1
2,818,408 - ECD_02688 0.26 -2.0
2,818,477 - ECD_02688 0.36 +0.4
2,818,538 + ECD_02688 0.45 -0.1
2,818,539 - ECD_02688 0.45 +1.4
2,818,539 - ECD_02688 0.45 -1.0
2,818,612 + ECD_02688 0.56 -2.0
2,818,613 - ECD_02688 0.56 +1.1
2,818,656 + ECD_02688 0.62 -0.4
2,818,657 - ECD_02688 0.62 -0.4
2,818,657 - ECD_02688 0.62 +1.1
2,818,666 - ECD_02688 0.64 -0.6
2,818,671 + ECD_02688 0.64 -0.9
2,818,672 - ECD_02688 0.65 -1.2
2,818,675 + ECD_02688 0.65 +0.1
2,818,675 + ECD_02688 0.65 -0.8
2,818,676 - ECD_02688 0.65 -1.1
2,818,676 - ECD_02688 0.65 -1.0
2,818,676 - ECD_02688 0.65 -1.7
2,818,676 - ECD_02688 0.65 -1.9
2,818,676 - ECD_02688 0.65 -1.0
2,818,676 - ECD_02688 0.65 +0.6
2,818,683 + ECD_02688 0.66 +0.0
2,818,683 + ECD_02688 0.66 +1.9
2,818,684 - ECD_02688 0.66 -2.0
2,818,684 - ECD_02688 0.66 -0.7
2,818,705 + ECD_02688 0.69 -1.0
2,818,743 + ECD_02688 0.75 -1.7
2,818,775 - ECD_02688 0.79 -0.1
2,818,775 - ECD_02688 0.79 +0.3
2,818,775 - ECD_02688 0.79 -0.2
2,818,775 - ECD_02688 0.79 -0.9
2,818,775 - ECD_02688 0.79 -0.7
2,818,794 + ECD_02688 0.82 -2.6
2,818,794 + ECD_02688 0.82 -1.0
2,818,798 + ECD_02688 0.83 -2.0
2,818,798 + ECD_02688 0.83 -2.2
2,818,798 + ECD_02688 0.83 +0.2
2,818,798 + ECD_02688 0.83 -0.9
2,818,799 - ECD_02688 0.83 -0.7
2,818,840 - ECD_02688 0.89 +0.2
2,818,853 - -2.3
2,818,853 - +0.2
2,818,853 - -2.5
2,818,862 + -0.6
2,818,862 + -1.9
2,818,865 + -1.1
2,818,999 + +2.3
2,819,000 - +1.2
2,819,000 - +1.7
2,819,023 + -2.1
2,819,023 + -0.4
2,819,023 + -1.4
2,819,024 - +1.4
2,819,024 - +0.5
2,819,024 - -1.7
2,819,096 + -0.3
2,819,097 - +1.0
2,819,097 - +0.3
2,819,173 + -0.6
2,819,240 + ECD_02689 0.14 -0.7
2,819,273 + ECD_02689 0.16 +0.6
2,819,274 - ECD_02689 0.16 -2.1
2,819,274 - ECD_02689 0.16 +0.9
2,819,274 - ECD_02689 0.16 -0.3
2,819,274 - ECD_02689 0.16 +0.3
2,819,274 - ECD_02689 0.16 +0.6
2,819,274 - ECD_02689 0.16 +1.8
2,819,274 - ECD_02689 0.16 +0.6
2,819,274 - ECD_02689 0.16 -0.6
2,819,274 - ECD_02689 0.16 +0.5
2,819,274 - ECD_02689 0.16 +1.1
2,819,277 - ECD_02689 0.16 -1.4
2,819,360 + ECD_02689 0.22 +0.7
2,819,360 + ECD_02689 0.22 -0.9
2,819,361 - ECD_02689 0.22 +1.1
2,819,361 - ECD_02689 0.22 +1.4
2,819,361 - ECD_02689 0.22 +1.0
2,819,361 - ECD_02689 0.22 -0.8
2,819,438 - ECD_02689 0.28 -0.9
2,819,438 - ECD_02689 0.28 -1.6
2,819,508 - ECD_02689 0.33 +0.3
2,819,508 - ECD_02689 0.33 +0.3
2,819,508 - ECD_02689 0.33 +0.6
2,819,508 - ECD_02689 0.33 -3.1
2,819,508 - ECD_02689 0.33 +0.4
2,819,543 + ECD_02689 0.35 -0.3
2,819,626 + ECD_02689 0.41 -2.1
2,819,629 + ECD_02689 0.41 +0.4
2,819,629 + ECD_02689 0.41 -0.9
2,819,630 - ECD_02689 0.41 +0.5
2,819,630 - ECD_02689 0.41 -0.1
2,819,630 - ECD_02689 0.41 +0.1
2,819,630 - ECD_02689 0.41 -1.4
2,819,630 - ECD_02689 0.41 -0.5
2,819,706 - ECD_02689 0.47 +1.6
2,819,718 - ECD_02689 0.47 +2.4
2,819,807 + ECD_02689 0.54 +0.2
2,819,807 + ECD_02689 0.54 -0.1
2,819,808 - ECD_02689 0.54 +0.3
2,819,808 - ECD_02689 0.54 -0.1
2,819,808 - ECD_02689 0.54 +0.8
2,819,815 - ECD_02689 0.54 +0.7
2,819,831 + ECD_02689 0.55 -0.9
2,819,832 - ECD_02689 0.55 -0.7

Or see this region's nucleotide sequence