Strain Fitness in Escherichia coli BL21 around ECD_02439

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02438 and ECD_02439 are separated by 24 nucleotidesECD_02439 and ECD_02440 are separated by 22 nucleotides ECD_02438: ECD_02438 - putative sugar ABC transporter permease, at 2,541,632 to 2,542,630 _02438 ECD_02439: ECD_02439 - putative sugar ABC transporter ATPase, at 2,542,655 to 2,544,166 _02439 ECD_02440: ECD_02440 - putative sugar ABC transporter periplasmic binding protein, at 2,544,189 to 2,545,172 _02440 Position (kb) 2542 2543 2544 2545Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2541.708 kb on - strandat 2541.730 kb on + strandat 2541.731 kb on - strandat 2541.767 kb on - strand, within ECD_02438at 2542.238 kb on + strand, within ECD_02438at 2542.408 kb on + strand, within ECD_02438at 2542.559 kb on - strandat 2542.614 kb on - strandat 2542.739 kb on + strandat 2542.740 kb on - strandat 2543.145 kb on + strand, within ECD_02439at 2543.226 kb on + strand, within ECD_02439at 2543.313 kb on - strand, within ECD_02439at 2543.318 kb on - strand, within ECD_02439at 2543.326 kb on + strand, within ECD_02439at 2543.345 kb on - strand, within ECD_02439at 2543.411 kb on - strand, within ECD_02439at 2543.446 kb on + strand, within ECD_02439at 2543.447 kb on - strand, within ECD_02439at 2543.556 kb on + strand, within ECD_02439at 2543.638 kb on + strand, within ECD_02439at 2543.639 kb on - strand, within ECD_02439at 2543.876 kb on + strand, within ECD_02439at 2543.877 kb on - strand, within ECD_02439at 2543.929 kb on + strand, within ECD_02439at 2544.116 kb on - strandat 2544.166 kb on + strandat 2544.245 kb on + strandat 2544.785 kb on - strand, within ECD_02440at 2544.785 kb on - strand, within ECD_02440at 2544.785 kb on - strand, within ECD_02440at 2544.820 kb on + strand, within ECD_02440at 2544.982 kb on - strand, within ECD_02440at 2545.064 kb on - strand, within ECD_02440at 2545.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,541,708 - +0.3
2,541,730 + -0.5
2,541,731 - +3.6
2,541,767 - ECD_02438 0.14 -0.7
2,542,238 + ECD_02438 0.61 -0.5
2,542,408 + ECD_02438 0.78 -0.7
2,542,559 - +0.3
2,542,614 - +0.5
2,542,739 + -2.8
2,542,740 - -1.6
2,543,145 + ECD_02439 0.32 -0.0
2,543,226 + ECD_02439 0.38 -0.6
2,543,313 - ECD_02439 0.44 +0.1
2,543,318 - ECD_02439 0.44 +0.1
2,543,326 + ECD_02439 0.44 +0.3
2,543,345 - ECD_02439 0.46 +1.3
2,543,411 - ECD_02439 0.50 +1.3
2,543,446 + ECD_02439 0.52 +0.8
2,543,447 - ECD_02439 0.52 -0.9
2,543,556 + ECD_02439 0.60 +2.1
2,543,638 + ECD_02439 0.65 +0.8
2,543,639 - ECD_02439 0.65 +1.4
2,543,876 + ECD_02439 0.81 -1.6
2,543,877 - ECD_02439 0.81 +2.2
2,543,929 + ECD_02439 0.84 -1.3
2,544,116 - +0.9
2,544,166 + -0.1
2,544,245 + -0.1
2,544,785 - ECD_02440 0.61 -2.7
2,544,785 - ECD_02440 0.61 -2.0
2,544,785 - ECD_02440 0.61 +0.4
2,544,820 + ECD_02440 0.64 -0.8
2,544,982 - ECD_02440 0.81 -1.0
2,545,064 - ECD_02440 0.89 -0.6
2,545,137 + -0.0

Or see this region's nucleotide sequence