Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02438 and ECD_02439 are separated by 24 nucleotides ECD_02439 and ECD_02440 are separated by 22 nucleotides
ECD_02438: ECD_02438 - putative sugar ABC transporter permease, at 2,541,632 to 2,542,630
_02438
ECD_02439: ECD_02439 - putative sugar ABC transporter ATPase, at 2,542,655 to 2,544,166
_02439
ECD_02440: ECD_02440 - putative sugar ABC transporter periplasmic binding protein, at 2,544,189 to 2,545,172
_02440
Position (kb)
2542
2543
2544
2545 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2541.708 kb on - strand at 2541.730 kb on + strand at 2541.731 kb on - strand at 2541.767 kb on - strand, within ECD_02438 at 2542.238 kb on + strand, within ECD_02438 at 2542.408 kb on + strand, within ECD_02438 at 2542.559 kb on - strand at 2542.614 kb on - strand at 2542.739 kb on + strand at 2542.740 kb on - strand at 2543.145 kb on + strand, within ECD_02439 at 2543.226 kb on + strand, within ECD_02439 at 2543.313 kb on - strand, within ECD_02439 at 2543.318 kb on - strand, within ECD_02439 at 2543.326 kb on + strand, within ECD_02439 at 2543.345 kb on - strand, within ECD_02439 at 2543.411 kb on - strand, within ECD_02439 at 2543.446 kb on + strand, within ECD_02439 at 2543.447 kb on - strand, within ECD_02439 at 2543.556 kb on + strand, within ECD_02439 at 2543.638 kb on + strand, within ECD_02439 at 2543.639 kb on - strand, within ECD_02439 at 2543.876 kb on + strand, within ECD_02439 at 2543.877 kb on - strand, within ECD_02439 at 2543.929 kb on + strand, within ECD_02439 at 2544.116 kb on - strand at 2544.166 kb on + strand at 2544.245 kb on + strand at 2544.785 kb on - strand, within ECD_02440 at 2544.785 kb on - strand, within ECD_02440 at 2544.785 kb on - strand, within ECD_02440 at 2544.820 kb on + strand, within ECD_02440 at 2544.982 kb on - strand, within ECD_02440 at 2545.064 kb on - strand, within ECD_02440 at 2545.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,541,708 - +0.3 2,541,730 + -0.5 2,541,731 - +3.6 2,541,767 - ECD_02438 0.14 -0.7 2,542,238 + ECD_02438 0.61 -0.5 2,542,408 + ECD_02438 0.78 -0.7 2,542,559 - +0.3 2,542,614 - +0.5 2,542,739 + -2.8 2,542,740 - -1.6 2,543,145 + ECD_02439 0.32 -0.0 2,543,226 + ECD_02439 0.38 -0.6 2,543,313 - ECD_02439 0.44 +0.1 2,543,318 - ECD_02439 0.44 +0.1 2,543,326 + ECD_02439 0.44 +0.3 2,543,345 - ECD_02439 0.46 +1.3 2,543,411 - ECD_02439 0.50 +1.3 2,543,446 + ECD_02439 0.52 +0.8 2,543,447 - ECD_02439 0.52 -0.9 2,543,556 + ECD_02439 0.60 +2.1 2,543,638 + ECD_02439 0.65 +0.8 2,543,639 - ECD_02439 0.65 +1.4 2,543,876 + ECD_02439 0.81 -1.6 2,543,877 - ECD_02439 0.81 +2.2 2,543,929 + ECD_02439 0.84 -1.3 2,544,116 - +0.9 2,544,166 + -0.1 2,544,245 + -0.1 2,544,785 - ECD_02440 0.61 -2.7 2,544,785 - ECD_02440 0.61 -2.0 2,544,785 - ECD_02440 0.61 +0.4 2,544,820 + ECD_02440 0.64 -0.8 2,544,982 - ECD_02440 0.81 -1.0 2,545,064 - ECD_02440 0.89 -0.6 2,545,137 + -0.0
Or see this region's nucleotide sequence