Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02298 and ECD_02299 are separated by 203 nucleotides ECD_02299 and ECD_02300 are separated by 114 nucleotides ECD_02300 and ECD_02301 are separated by 140 nucleotides
ECD_02298: ECD_02298 - glucokinase, at 2,386,347 to 2,387,312
_02298
ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772
_02299
ECD_02300: ECD_02300 - DUF2502 family putative periplasmic protein, at 2,388,887 to 2,389,213
_02300
ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592
_02301
Position (kb)
2387
2388
2389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2386.593 kb on - strand, within ECD_02298 at 2386.662 kb on - strand, within ECD_02298 at 2386.717 kb on + strand, within ECD_02298 at 2386.932 kb on - strand, within ECD_02298 at 2387.133 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.171 kb on - strand, within ECD_02298 at 2387.216 kb on - strand at 2387.296 kb on - strand at 2387.303 kb on - strand at 2387.303 kb on - strand at 2387.375 kb on - strand at 2387.485 kb on + strand at 2387.486 kb on - strand at 2387.486 kb on - strand at 2387.701 kb on - strand, within ECD_02299 at 2387.824 kb on + strand, within ECD_02299 at 2387.835 kb on + strand, within ECD_02299 at 2387.836 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.998 kb on + strand, within ECD_02299 at 2387.999 kb on - strand, within ECD_02299 at 2388.022 kb on - strand, within ECD_02299 at 2388.417 kb on - strand, within ECD_02299 at 2388.437 kb on - strand, within ECD_02299 at 2388.705 kb on + strand at 2388.706 kb on - strand at 2388.708 kb on + strand at 2388.709 kb on - strand at 2388.963 kb on + strand, within ECD_02300 at 2389.103 kb on + strand, within ECD_02300 at 2389.133 kb on + strand, within ECD_02300 at 2389.263 kb on - strand at 2389.355 kb on + strand at 2389.356 kb on - strand at 2389.390 kb on - strand at 2389.564 kb on + strand, within ECD_02301 at 2389.767 kb on - strand, within ECD_02301
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,386,593 - ECD_02298 0.25 +0.1 2,386,662 - ECD_02298 0.33 +0.1 2,386,717 + ECD_02298 0.38 -0.3 2,386,932 - ECD_02298 0.61 +1.1 2,387,133 - ECD_02298 0.81 -1.7 2,387,157 - ECD_02298 0.84 -2.7 2,387,157 - ECD_02298 0.84 +1.2 2,387,157 - ECD_02298 0.84 +0.1 2,387,157 - ECD_02298 0.84 -2.0 2,387,171 - ECD_02298 0.85 +0.2 2,387,216 - +2.7 2,387,296 - -0.1 2,387,303 - -0.6 2,387,303 - +0.3 2,387,375 - -1.5 2,387,485 + -1.7 2,387,486 - +0.1 2,387,486 - +0.4 2,387,701 - ECD_02299 0.15 +1.0 2,387,824 + ECD_02299 0.25 +0.0 2,387,835 + ECD_02299 0.25 -0.3 2,387,836 - ECD_02299 0.25 +2.1 2,387,960 - ECD_02299 0.35 -0.2 2,387,960 - ECD_02299 0.35 -2.3 2,387,998 + ECD_02299 0.38 +1.8 2,387,999 - ECD_02299 0.38 -0.6 2,388,022 - ECD_02299 0.40 +1.0 2,388,417 - ECD_02299 0.72 -0.2 2,388,437 - ECD_02299 0.73 +1.0 2,388,705 + +0.5 2,388,706 - -0.6 2,388,708 + +1.3 2,388,709 - -1.5 2,388,963 + ECD_02300 0.23 -0.4 2,389,103 + ECD_02300 0.66 -0.8 2,389,133 + ECD_02300 0.75 -0.4 2,389,263 - +0.0 2,389,355 + +0.7 2,389,356 - +0.0 2,389,390 - +0.4 2,389,564 + ECD_02301 0.17 -0.6 2,389,767 - ECD_02301 0.33 -0.5
Or see this region's nucleotide sequence