Strain Fitness in Escherichia coli BL21 around ECD_02230

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02228 and ECD_02229 are separated by 20 nucleotidesECD_02229 and ECD_02230 are separated by 47 nucleotidesECD_02230 and ECD_02231 are separated by 196 nucleotidesECD_02231 and ECD_02232 are separated by 7 nucleotides ECD_02228: ECD_02228 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase, at 2,308,578 to 2,308,940 _02228 ECD_02229: ECD_02229 - putative NAD-dependent nucleotide-sugar epimerase, at 2,308,961 to 2,309,854 _02229 ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792 _02230 ECD_02231: ECD_02231 - histidine ABC transporter ATPase, at 2,310,989 to 2,311,762 _02231 ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486 _02232 Position (kb) 2309 2310 2311Strain fitness (log2 ratio) -2 -1 0 1at 2308.924 kb on + strandat 2308.968 kb on + strandat 2308.968 kb on + strandat 2308.968 kb on + strandat 2308.969 kb on - strandat 2309.312 kb on + strand, within ECD_02229at 2309.476 kb on + strand, within ECD_02229at 2309.620 kb on + strand, within ECD_02229at 2309.620 kb on + strand, within ECD_02229at 2309.621 kb on - strand, within ECD_02229at 2309.757 kb on + strand, within ECD_02229at 2309.757 kb on + strand, within ECD_02229at 2309.823 kb on + strandat 2309.883 kb on - strandat 2309.968 kb on + strandat 2309.969 kb on - strandat 2309.969 kb on - strandat 2310.143 kb on - strand, within ECD_02230at 2310.145 kb on + strand, within ECD_02230at 2310.150 kb on - strand, within ECD_02230at 2310.991 kb on - strandat 2311.106 kb on - strand, within ECD_02231at 2311.184 kb on - strand, within ECD_02231at 2311.445 kb on - strand, within ECD_02231at 2311.445 kb on - strand, within ECD_02231at 2311.665 kb on - strand, within ECD_02231at 2311.665 kb on - strand, within ECD_02231at 2311.746 kb on - strandat 2311.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,308,924 + -1.4
2,308,968 + -1.1
2,308,968 + +0.0
2,308,968 + +0.6
2,308,969 - -0.8
2,309,312 + ECD_02229 0.39 -1.6
2,309,476 + ECD_02229 0.58 +0.9
2,309,620 + ECD_02229 0.74 -0.6
2,309,620 + ECD_02229 0.74 +0.3
2,309,621 - ECD_02229 0.74 -1.3
2,309,757 + ECD_02229 0.89 -1.1
2,309,757 + ECD_02229 0.89 -1.0
2,309,823 + +0.4
2,309,883 - -1.7
2,309,968 + -0.3
2,309,969 - -1.1
2,309,969 - -0.7
2,310,143 - ECD_02230 0.27 -0.5
2,310,145 + ECD_02230 0.27 -0.8
2,310,150 - ECD_02230 0.28 -0.4
2,310,991 - -0.5
2,311,106 - ECD_02231 0.15 -0.3
2,311,184 - ECD_02231 0.25 -2.5
2,311,445 - ECD_02231 0.59 -1.6
2,311,445 - ECD_02231 0.59 +0.7
2,311,665 - ECD_02231 0.87 -0.2
2,311,665 - ECD_02231 0.87 -1.8
2,311,746 - +0.1
2,311,746 - -1.3

Or see this region's nucleotide sequence