Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02228 and ECD_02229 are separated by 20 nucleotides ECD_02229 and ECD_02230 are separated by 47 nucleotides ECD_02230 and ECD_02231 are separated by 196 nucleotides ECD_02231 and ECD_02232 are separated by 7 nucleotides
ECD_02228: ECD_02228 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase, at 2,308,578 to 2,308,940
_02228
ECD_02229: ECD_02229 - putative NAD-dependent nucleotide-sugar epimerase, at 2,308,961 to 2,309,854
_02229
ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792
_02230
ECD_02231: ECD_02231 - histidine ABC transporter ATPase, at 2,310,989 to 2,311,762
_02231
ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486
_02232
Position (kb)
2309
2310
2311 Strain fitness (log2 ratio)
-2
-1
0
1 at 2308.924 kb on + strand at 2308.968 kb on + strand at 2308.968 kb on + strand at 2308.968 kb on + strand at 2308.969 kb on - strand at 2309.312 kb on + strand, within ECD_02229 at 2309.476 kb on + strand, within ECD_02229 at 2309.620 kb on + strand, within ECD_02229 at 2309.620 kb on + strand, within ECD_02229 at 2309.621 kb on - strand, within ECD_02229 at 2309.757 kb on + strand, within ECD_02229 at 2309.757 kb on + strand, within ECD_02229 at 2309.823 kb on + strand at 2309.883 kb on - strand at 2309.968 kb on + strand at 2309.969 kb on - strand at 2309.969 kb on - strand at 2310.143 kb on - strand, within ECD_02230 at 2310.145 kb on + strand, within ECD_02230 at 2310.150 kb on - strand, within ECD_02230 at 2310.991 kb on - strand at 2311.106 kb on - strand, within ECD_02231 at 2311.184 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.746 kb on - strand at 2311.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,308,924 + -1.4 2,308,968 + -1.1 2,308,968 + +0.0 2,308,968 + +0.6 2,308,969 - -0.8 2,309,312 + ECD_02229 0.39 -1.6 2,309,476 + ECD_02229 0.58 +0.9 2,309,620 + ECD_02229 0.74 -0.6 2,309,620 + ECD_02229 0.74 +0.3 2,309,621 - ECD_02229 0.74 -1.3 2,309,757 + ECD_02229 0.89 -1.1 2,309,757 + ECD_02229 0.89 -1.0 2,309,823 + +0.4 2,309,883 - -1.7 2,309,968 + -0.3 2,309,969 - -1.1 2,309,969 - -0.7 2,310,143 - ECD_02230 0.27 -0.5 2,310,145 + ECD_02230 0.27 -0.8 2,310,150 - ECD_02230 0.28 -0.4 2,310,991 - -0.5 2,311,106 - ECD_02231 0.15 -0.3 2,311,184 - ECD_02231 0.25 -2.5 2,311,445 - ECD_02231 0.59 -1.6 2,311,445 - ECD_02231 0.59 +0.7 2,311,665 - ECD_02231 0.87 -0.2 2,311,665 - ECD_02231 0.87 -1.8 2,311,746 - +0.1 2,311,746 - -1.3
Or see this region's nucleotide sequence