Strain Fitness in Escherichia coli BL21 around ECD_02090

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02089 and ECD_02090 are separated by 55 nucleotidesECD_02090 and ECD_02091 are separated by 99 nucleotides ECD_02089: ECD_02089 - putative kinase, at 2,146,599 to 2,147,687 _02089 ECD_02090: ECD_02090 - nucleoside permease, at 2,147,743 to 2,148,993 _02090 ECD_02091: ECD_02091 - ribonucleoside hydrolase 2, at 2,149,093 to 2,150,034 _02091 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -2 -1 0 1 2at 2146.916 kb on - strand, within ECD_02089at 2147.150 kb on - strand, within ECD_02089at 2147.425 kb on - strand, within ECD_02089at 2147.549 kb on + strand, within ECD_02089at 2147.632 kb on + strandat 2147.685 kb on + strandat 2147.773 kb on - strandat 2148.156 kb on + strand, within ECD_02090at 2148.587 kb on - strand, within ECD_02090at 2148.602 kb on - strand, within ECD_02090at 2148.765 kb on + strand, within ECD_02090at 2148.765 kb on + strand, within ECD_02090at 2148.994 kb on - strandat 2148.997 kb on + strandat 2148.998 kb on - strandat 2149.084 kb on + strandat 2149.084 kb on + strandat 2149.095 kb on - strandat 2149.159 kb on - strandat 2149.259 kb on + strand, within ECD_02091at 2149.260 kb on - strand, within ECD_02091at 2149.570 kb on - strand, within ECD_02091at 2149.630 kb on - strand, within ECD_02091

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,146,916 - ECD_02089 0.29 -0.9
2,147,150 - ECD_02089 0.51 +0.5
2,147,425 - ECD_02089 0.76 -0.1
2,147,549 + ECD_02089 0.87 +1.5
2,147,632 + +2.0
2,147,685 + -0.7
2,147,773 - -1.5
2,148,156 + ECD_02090 0.33 +0.4
2,148,587 - ECD_02090 0.67 -0.1
2,148,602 - ECD_02090 0.69 -0.1
2,148,765 + ECD_02090 0.82 -0.1
2,148,765 + ECD_02090 0.82 +2.2
2,148,994 - -1.1
2,148,997 + -1.3
2,148,998 - -0.6
2,149,084 + -0.1
2,149,084 + -0.6
2,149,095 - +1.1
2,149,159 - -0.1
2,149,259 + ECD_02091 0.18 -2.0
2,149,260 - ECD_02091 0.18 +0.3
2,149,570 - ECD_02091 0.51 +1.1
2,149,630 - ECD_02091 0.57 +1.3

Or see this region's nucleotide sequence