Strain Fitness in Escherichia coli BL21 around ECD_02083

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02081 and ECD_02082 are separated by 16 nucleotidesECD_02082 and ECD_02083 are separated by 257 nucleotidesECD_02083 and ECD_02084 are separated by 31 nucleotides ECD_02081: ECD_02081 - DUF418 family putative inner membrane protein, at 2,136,709 to 2,137,866 _02081 ECD_02082: ECD_02082 - GTP cyclohydrolase I, at 2,137,883 to 2,138,551 _02082 ECD_02083: ECD_02083 - S-formylglutathione hydrolase, at 2,138,809 to 2,139,645 _02083 ECD_02084: ECD_02084 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter, at 2,139,677 to 2,141,668 _02084 Position (kb) 2138 2139 2140Strain fitness (log2 ratio) -2 -1 0 1 2at 2138.607 kb on - strandat 2138.617 kb on - strandat 2138.628 kb on - strandat 2138.729 kb on - strandat 2138.902 kb on - strand, within ECD_02083at 2139.116 kb on - strand, within ECD_02083at 2139.161 kb on - strand, within ECD_02083at 2139.161 kb on - strand, within ECD_02083at 2139.208 kb on - strand, within ECD_02083at 2139.267 kb on + strand, within ECD_02083at 2139.292 kb on + strand, within ECD_02083at 2139.293 kb on - strand, within ECD_02083at 2139.367 kb on + strand, within ECD_02083at 2139.421 kb on + strand, within ECD_02083at 2139.555 kb on + strand, within ECD_02083at 2139.580 kb on + strandat 2139.584 kb on - strandat 2139.601 kb on - strandat 2139.726 kb on + strandat 2139.727 kb on - strandat 2139.727 kb on - strandat 2139.732 kb on + strandat 2139.732 kb on + strandat 2139.733 kb on - strandat 2139.733 kb on - strandat 2139.733 kb on - strandat 2139.883 kb on + strand, within ECD_02084at 2140.017 kb on + strand, within ECD_02084at 2140.018 kb on - strand, within ECD_02084at 2140.018 kb on - strand, within ECD_02084at 2140.024 kb on - strand, within ECD_02084at 2140.024 kb on - strand, within ECD_02084at 2140.088 kb on - strand, within ECD_02084at 2140.115 kb on - strand, within ECD_02084at 2140.115 kb on - strand, within ECD_02084at 2140.288 kb on - strand, within ECD_02084at 2140.288 kb on - strand, within ECD_02084at 2140.351 kb on + strand, within ECD_02084at 2140.352 kb on - strand, within ECD_02084at 2140.391 kb on - strand, within ECD_02084at 2140.464 kb on + strand, within ECD_02084at 2140.465 kb on - strand, within ECD_02084

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,138,607 - +1.0
2,138,617 - +1.4
2,138,628 - -1.2
2,138,729 - +1.0
2,138,902 - ECD_02083 0.11 +1.0
2,139,116 - ECD_02083 0.37 +2.6
2,139,161 - ECD_02083 0.42 +0.4
2,139,161 - ECD_02083 0.42 -0.4
2,139,208 - ECD_02083 0.48 +0.2
2,139,267 + ECD_02083 0.55 +0.1
2,139,292 + ECD_02083 0.58 -0.6
2,139,293 - ECD_02083 0.58 -0.9
2,139,367 + ECD_02083 0.67 +0.6
2,139,421 + ECD_02083 0.73 -0.7
2,139,555 + ECD_02083 0.89 -2.2
2,139,580 + +0.9
2,139,584 - +2.2
2,139,601 - +0.1
2,139,726 + -1.1
2,139,727 - +1.8
2,139,727 - -0.2
2,139,732 + -0.5
2,139,732 + -0.5
2,139,733 - +0.3
2,139,733 - -0.3
2,139,733 - +1.1
2,139,883 + ECD_02084 0.10 -1.4
2,140,017 + ECD_02084 0.17 +2.1
2,140,018 - ECD_02084 0.17 +0.2
2,140,018 - ECD_02084 0.17 -0.1
2,140,024 - ECD_02084 0.17 -1.5
2,140,024 - ECD_02084 0.17 +0.6
2,140,088 - ECD_02084 0.21 -1.1
2,140,115 - ECD_02084 0.22 +0.9
2,140,115 - ECD_02084 0.22 +1.2
2,140,288 - ECD_02084 0.31 -0.6
2,140,288 - ECD_02084 0.31 +0.8
2,140,351 + ECD_02084 0.34 +0.4
2,140,352 - ECD_02084 0.34 +0.7
2,140,391 - ECD_02084 0.36 -0.0
2,140,464 + ECD_02084 0.40 +1.4
2,140,465 - ECD_02084 0.40 +0.4

Or see this region's nucleotide sequence