Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02058 and ECD_02059 are separated by 4 nucleotides ECD_02059 and ECD_02060 overlap by 8 nucleotides ECD_02060 and ECD_02061 are separated by 6 nucleotides
ECD_02058: ECD_02058 - putative ABC transporter permease, at 2,110,608 to 2,111,339
_02058
ECD_02059: ECD_02059 - putative ABC transporter ATPase, at 2,111,344 to 2,112,270
_02059
ECD_02060: ECD_02060 - putative ABC transporter permease, at 2,112,263 to 2,113,420
_02060
ECD_02061: ECD_02061 - putative ABC transporter periplasmic binding protein, at 2,113,427 to 2,114,344
_02061
Position (kb)
2112
2113
2114 Strain fitness (log2 ratio)
-1
0
1
2 at 2111.514 kb on - strand, within ECD_02059 at 2111.527 kb on - strand, within ECD_02059 at 2111.560 kb on - strand, within ECD_02059 at 2111.632 kb on + strand, within ECD_02059 at 2111.654 kb on - strand, within ECD_02059 at 2111.932 kb on - strand, within ECD_02059 at 2112.445 kb on + strand, within ECD_02060 at 2112.446 kb on - strand, within ECD_02060 at 2112.488 kb on + strand, within ECD_02060 at 2112.596 kb on + strand, within ECD_02060 at 2112.628 kb on - strand, within ECD_02060 at 2112.672 kb on - strand, within ECD_02060 at 2113.173 kb on - strand, within ECD_02060 at 2113.455 kb on + strand at 2113.617 kb on + strand, within ECD_02061 at 2113.618 kb on - strand, within ECD_02061 at 2113.964 kb on - strand, within ECD_02061 at 2114.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,111,514 - ECD_02059 0.18 +1.7 2,111,527 - ECD_02059 0.20 -0.8 2,111,560 - ECD_02059 0.23 -0.9 2,111,632 + ECD_02059 0.31 +0.5 2,111,654 - ECD_02059 0.33 +0.9 2,111,932 - ECD_02059 0.63 +1.8 2,112,445 + ECD_02060 0.16 +2.5 2,112,446 - ECD_02060 0.16 -1.0 2,112,488 + ECD_02060 0.19 -0.8 2,112,596 + ECD_02060 0.29 -0.8 2,112,628 - ECD_02060 0.32 -1.1 2,112,672 - ECD_02060 0.35 +1.6 2,113,173 - ECD_02060 0.79 -0.8 2,113,455 + -0.1 2,113,617 + ECD_02061 0.21 +0.0 2,113,618 - ECD_02061 0.21 +0.6 2,113,964 - ECD_02061 0.58 -1.5 2,114,398 - +1.0
Or see this region's nucleotide sequence