Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01927 and ECD_01928 overlap by 7 nucleotides ECD_01928 and ECD_01929 are separated by 95 nucleotides ECD_01929 and ECD_01930 are separated by 145 nucleotides
ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423
_01927
ECD_01928: ECD_01928 - phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase, at 1,992,417 to 1,993,028
_01928
ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104
_01929
ECD_01930: ECD_01930 - UDP-glucose 6-dehydrogenase, at 1,994,250 to 1,995,416
_01930
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1992.416 kb on + strand at 1992.791 kb on + strand, within ECD_01928 at 1992.816 kb on + strand, within ECD_01928 at 1992.904 kb on + strand, within ECD_01928 at 1993.263 kb on - strand, within ECD_01929 at 1993.342 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.436 kb on - strand, within ECD_01929 at 1993.654 kb on - strand, within ECD_01929 at 1993.699 kb on - strand, within ECD_01929 at 1993.730 kb on - strand, within ECD_01929 at 1993.821 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.868 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929 at 1994.175 kb on - strand at 1994.228 kb on - strand at 1994.414 kb on - strand, within ECD_01930 at 1994.414 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.513 kb on - strand, within ECD_01930 at 1994.624 kb on - strand, within ECD_01930 at 1994.635 kb on - strand, within ECD_01930 at 1994.646 kb on - strand, within ECD_01930 at 1994.663 kb on - strand, within ECD_01930 at 1994.693 kb on - strand, within ECD_01930 at 1994.706 kb on - strand, within ECD_01930 at 1994.768 kb on - strand, within ECD_01930 at 1994.772 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,992,416 + +0.5 1,992,791 + ECD_01928 0.61 +0.4 1,992,816 + ECD_01928 0.65 +1.6 1,992,904 + ECD_01928 0.80 -0.2 1,993,263 - ECD_01929 0.14 +1.8 1,993,342 - ECD_01929 0.22 +0.7 1,993,382 - ECD_01929 0.26 -0.2 1,993,382 - ECD_01929 0.26 +1.8 1,993,424 - ECD_01929 0.31 +2.2 1,993,424 - ECD_01929 0.31 +1.8 1,993,424 - ECD_01929 0.31 +1.5 1,993,436 - ECD_01929 0.32 -0.3 1,993,654 - ECD_01929 0.54 +0.6 1,993,699 - ECD_01929 0.59 +0.6 1,993,730 - ECD_01929 0.62 +1.8 1,993,821 - ECD_01929 0.71 +0.1 1,993,864 - ECD_01929 0.75 -0.8 1,993,864 - ECD_01929 0.75 +1.2 1,993,864 - ECD_01929 0.75 -0.3 1,993,868 - ECD_01929 0.76 +0.3 1,993,886 - ECD_01929 0.78 +1.8 1,993,886 - ECD_01929 0.78 +0.8 1,994,175 - -1.2 1,994,228 - +1.8 1,994,414 - ECD_01930 0.14 +0.8 1,994,414 - ECD_01930 0.14 +1.0 1,994,445 - ECD_01930 0.17 +0.2 1,994,445 - ECD_01930 0.17 -0.9 1,994,445 - ECD_01930 0.17 +0.8 1,994,513 - ECD_01930 0.23 +1.1 1,994,624 - ECD_01930 0.32 +0.9 1,994,635 - ECD_01930 0.33 +1.2 1,994,646 - ECD_01930 0.34 -0.3 1,994,663 - ECD_01930 0.35 -0.5 1,994,693 - ECD_01930 0.38 +0.0 1,994,706 - ECD_01930 0.39 -0.8 1,994,768 - ECD_01930 0.44 +0.3 1,994,772 - ECD_01930 0.45 +0.6 1,994,946 - ECD_01930 0.60 +1.3 1,994,946 - ECD_01930 0.60 +0.8 1,994,946 - ECD_01930 0.60 -2.0 1,994,946 - ECD_01930 0.60 +1.5
Or see this region's nucleotide sequence