Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01911 and ECD_01912 are separated by 197 nucleotides ECD_01912 and ECD_01913 are separated by 118 nucleotides ECD_01913 and ECD_01914 are separated by 208 nucleotides
ECD_01911: ECD_01911 - putative transporter, FUSC family inner membrane protein, at 1,975,777 to 1,976,835
_01911
ECD_01912: ECD_01912 - DNA gyrase inhibitor, at 1,977,033 to 1,977,506
_01912
ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791
_01913
ECD_01914: ECD_01914 - exodeoxyribonuclease I; exonuclease I, at 1,979,000 to 1,980,427
_01914
Position (kb)
1977
1978
1979 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1977.034 kb on + strand at 1977.107 kb on - strand, within ECD_01912 at 1977.281 kb on + strand, within ECD_01912 at 1977.392 kb on + strand, within ECD_01912 at 1977.397 kb on - strand, within ECD_01912 at 1977.474 kb on - strand at 1977.500 kb on - strand at 1977.800 kb on + strand, within ECD_01913 at 1977.942 kb on + strand, within ECD_01913 at 1978.087 kb on - strand, within ECD_01913 at 1978.187 kb on + strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.248 kb on - strand, within ECD_01913 at 1978.257 kb on + strand, within ECD_01913 at 1978.580 kb on + strand, within ECD_01913 at 1978.581 kb on - strand, within ECD_01913 at 1979.353 kb on + strand, within ECD_01914 at 1979.432 kb on + strand, within ECD_01914
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,977,034 + -0.3 1,977,107 - ECD_01912 0.16 -1.7 1,977,281 + ECD_01912 0.52 -0.5 1,977,392 + ECD_01912 0.76 -0.4 1,977,397 - ECD_01912 0.77 -0.7 1,977,474 - -0.4 1,977,500 - +1.7 1,977,800 + ECD_01913 0.15 -0.8 1,977,942 + ECD_01913 0.27 +0.1 1,978,087 - ECD_01913 0.40 +1.1 1,978,187 + ECD_01913 0.48 +0.4 1,978,188 - ECD_01913 0.48 +0.4 1,978,188 - ECD_01913 0.48 +2.3 1,978,248 - ECD_01913 0.53 -2.6 1,978,257 + ECD_01913 0.54 +0.5 1,978,580 + ECD_01913 0.82 -1.0 1,978,581 - ECD_01913 0.82 +1.6 1,979,353 + ECD_01914 0.25 -1.4 1,979,432 + ECD_01914 0.30 +0.9
Or see this region's nucleotide sequence