Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01899 and ECD_01900 are separated by 64 nucleotides ECD_01900 and ECD_01901 are separated by 11 nucleotides ECD_01901 and ECD_01902 overlap by 4 nucleotides
ECD_01899: ECD_01899 - L,D-transpeptidase linking Lpp to murein, at 1,967,539 to 1,968,471
_01899
ECD_01900: ECD_01900 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,968,536 to 1,969,615
_01900
ECD_01901: ECD_01901 - cobalamin synthase, at 1,969,627 to 1,970,370
_01901
ECD_01902: ECD_01902 - cobinamide kinase and cobinamide phosphate guanylyltransferase, at 1,970,367 to 1,970,912
_01902
Position (kb)
1968
1969
1970 Strain fitness (log2 ratio)
-1
0
1
2 at 1967.617 kb on + strand at 1967.762 kb on + strand, within ECD_01899 at 1967.822 kb on + strand, within ECD_01899 at 1967.850 kb on + strand, within ECD_01899 at 1967.895 kb on + strand, within ECD_01899 at 1968.130 kb on - strand, within ECD_01899 at 1968.285 kb on + strand, within ECD_01899 at 1968.511 kb on - strand at 1968.610 kb on - strand at 1968.861 kb on - strand, within ECD_01900 at 1969.146 kb on - strand, within ECD_01900 at 1969.146 kb on - strand, within ECD_01900 at 1969.280 kb on + strand, within ECD_01900 at 1969.421 kb on - strand, within ECD_01900 at 1969.589 kb on - strand at 1969.790 kb on - strand, within ECD_01901 at 1969.898 kb on + strand, within ECD_01901 at 1969.899 kb on - strand, within ECD_01901 at 1969.899 kb on - strand, within ECD_01901 at 1970.009 kb on - strand, within ECD_01901 at 1970.086 kb on - strand, within ECD_01901 at 1970.170 kb on - strand, within ECD_01901 at 1970.246 kb on - strand, within ECD_01901 at 1970.518 kb on - strand, within ECD_01902
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,967,617 + -0.3 1,967,762 + ECD_01899 0.24 -0.6 1,967,822 + ECD_01899 0.30 -0.2 1,967,850 + ECD_01899 0.33 -0.5 1,967,895 + ECD_01899 0.38 -0.3 1,968,130 - ECD_01899 0.63 +0.4 1,968,285 + ECD_01899 0.80 -0.2 1,968,511 - +2.6 1,968,610 - +0.1 1,968,861 - ECD_01900 0.30 +0.6 1,969,146 - ECD_01900 0.56 -0.3 1,969,146 - ECD_01900 0.56 +0.2 1,969,280 + ECD_01900 0.69 -0.2 1,969,421 - ECD_01900 0.82 -1.6 1,969,589 - -0.5 1,969,790 - ECD_01901 0.22 -0.4 1,969,898 + ECD_01901 0.36 +1.4 1,969,899 - ECD_01901 0.37 -1.3 1,969,899 - ECD_01901 0.37 +0.9 1,970,009 - ECD_01901 0.51 -0.5 1,970,086 - ECD_01901 0.62 +0.3 1,970,170 - ECD_01901 0.73 +1.4 1,970,246 - ECD_01901 0.83 +1.7 1,970,518 - ECD_01902 0.28 +0.1
Or see this region's nucleotide sequence