Strain Fitness in Escherichia coli BL21 around ECD_01836

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01834 and ECD_01835 are separated by 34 nucleotidesECD_01835 and ECD_01836 are separated by 28 nucleotidesECD_01836 and ECD_01837 are separated by 117 nucleotides ECD_01834: ECD_01834 - component of RuvABC resolvasome, endonuclease, at 1,892,773 to 1,893,294 _01834 ECD_01835: ECD_01835 - UPF0082 family protein, at 1,893,329 to 1,894,069 _01835 ECD_01836: ECD_01836 - dihydroneopterin triphosphate pyrophosphatase, at 1,894,098 to 1,894,550 _01836 ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440 _01837 Position (kb) 1894 1895Strain fitness (log2 ratio) -1 0 1 2 3at 1893.318 kb on - strandat 1893.577 kb on - strand, within ECD_01835at 1894.114 kb on - strandat 1894.114 kb on - strandat 1894.152 kb on - strand, within ECD_01836at 1894.190 kb on - strand, within ECD_01836at 1894.260 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.336 kb on - strand, within ECD_01836at 1894.381 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.535 kb on - strandat 1894.542 kb on - strandat 1894.542 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.600 kb on - strandat 1894.600 kb on - strandat 1894.667 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
1,893,318 - -0.9
1,893,577 - ECD_01835 0.33 +0.2
1,894,114 - +1.2
1,894,114 - +0.7
1,894,152 - ECD_01836 0.12 +1.0
1,894,190 - ECD_01836 0.20 +0.2
1,894,260 - ECD_01836 0.36 -0.2
1,894,291 - ECD_01836 0.43 +0.9
1,894,291 - ECD_01836 0.43 +2.1
1,894,291 - ECD_01836 0.43 -0.2
1,894,291 - ECD_01836 0.43 +1.2
1,894,336 - ECD_01836 0.53 +1.1
1,894,381 - ECD_01836 0.62 +0.8
1,894,502 - ECD_01836 0.89 -1.2
1,894,502 - ECD_01836 0.89 +3.2
1,894,502 - ECD_01836 0.89 +1.9
1,894,502 - ECD_01836 0.89 +0.7
1,894,535 - +1.2
1,894,542 - +0.7
1,894,542 - +1.4
1,894,592 - -0.1
1,894,592 - +2.0
1,894,592 - +1.2
1,894,592 - +1.3
1,894,592 - +1.4
1,894,592 - +2.0
1,894,592 - +2.3
1,894,592 - +0.3
1,894,592 - +0.2
1,894,596 - +0.4
1,894,596 - +1.2
1,894,596 - +1.6
1,894,596 - +0.9
1,894,596 - +1.5
1,894,596 - +1.2
1,894,600 - +3.1
1,894,600 - +0.7
1,894,667 - +0.3

Or see this region's nucleotide sequence