Strain Fitness in Escherichia coli BL21 around ECD_01824

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01823 and ECD_01824 are separated by 337 nucleotidesECD_01824 and ECD_01825 are separated by 127 nucleotides ECD_01823: ECD_01823 - glucose-6-phosphate 1-dehydrogenase, at 1,880,563 to 1,882,038 _01823 ECD_01824: ECD_01824 - putative DNA-binding transcriptional regulator, at 1,882,376 to 1,883,245 _01824 ECD_01825: ECD_01825 - pyruvate kinase II, at 1,883,373 to 1,884,815 _01825 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -2 -1 0 1 2at 1882.051 kb on - strandat 1882.056 kb on - strandat 1882.056 kb on - strandat 1882.072 kb on - strandat 1882.072 kb on - strandat 1882.382 kb on - strandat 1882.668 kb on + strand, within ECD_01824at 1882.819 kb on + strand, within ECD_01824at 1882.885 kb on + strand, within ECD_01824at 1882.885 kb on + strand, within ECD_01824at 1882.886 kb on - strand, within ECD_01824at 1883.055 kb on + strand, within ECD_01824at 1883.065 kb on + strand, within ECD_01824at 1883.075 kb on + strand, within ECD_01824at 1883.075 kb on + strand, within ECD_01824at 1883.075 kb on + strand, within ECD_01824at 1883.075 kb on + strand, within ECD_01824at 1883.076 kb on - strand, within ECD_01824at 1883.115 kb on + strand, within ECD_01824at 1883.115 kb on + strand, within ECD_01824at 1883.115 kb on + strand, within ECD_01824at 1883.116 kb on - strand, within ECD_01824at 1883.116 kb on - strand, within ECD_01824at 1883.224 kb on + strandat 1883.229 kb on + strandat 1883.270 kb on + strandat 1883.291 kb on + strandat 1883.367 kb on + strandat 1883.367 kb on + strandat 1883.370 kb on + strandat 1883.370 kb on + strandat 1883.370 kb on + strandat 1883.370 kb on + strandat 1883.712 kb on + strand, within ECD_01825at 1883.855 kb on + strand, within ECD_01825at 1883.855 kb on + strand, within ECD_01825at 1883.855 kb on + strand, within ECD_01825at 1883.941 kb on + strand, within ECD_01825at 1883.988 kb on + strand, within ECD_01825at 1884.245 kb on + strand, within ECD_01825at 1884.245 kb on + strand, within ECD_01825

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,882,051 - +1.0
1,882,056 - -0.4
1,882,056 - -0.2
1,882,072 - -1.1
1,882,072 - -0.8
1,882,382 - +0.4
1,882,668 + ECD_01824 0.34 -0.2
1,882,819 + ECD_01824 0.51 +1.0
1,882,885 + ECD_01824 0.59 +0.2
1,882,885 + ECD_01824 0.59 +1.2
1,882,886 - ECD_01824 0.59 +0.6
1,883,055 + ECD_01824 0.78 +1.4
1,883,065 + ECD_01824 0.79 -0.9
1,883,075 + ECD_01824 0.80 +2.1
1,883,075 + ECD_01824 0.80 +2.2
1,883,075 + ECD_01824 0.80 +0.8
1,883,075 + ECD_01824 0.80 +1.4
1,883,076 - ECD_01824 0.80 -1.8
1,883,115 + ECD_01824 0.85 +2.1
1,883,115 + ECD_01824 0.85 +1.6
1,883,115 + ECD_01824 0.85 +1.7
1,883,116 - ECD_01824 0.85 -0.4
1,883,116 - ECD_01824 0.85 -0.3
1,883,224 + +0.5
1,883,229 + -1.6
1,883,270 + +1.2
1,883,291 + +2.6
1,883,367 + +0.3
1,883,367 + -0.0
1,883,370 + -0.0
1,883,370 + -0.5
1,883,370 + -0.4
1,883,370 + -0.0
1,883,712 + ECD_01825 0.23 -1.1
1,883,855 + ECD_01825 0.33 +1.2
1,883,855 + ECD_01825 0.33 -1.6
1,883,855 + ECD_01825 0.33 -1.7
1,883,941 + ECD_01825 0.39 +0.1
1,883,988 + ECD_01825 0.43 +1.7
1,884,245 + ECD_01825 0.60 +0.3
1,884,245 + ECD_01825 0.60 +1.1

Or see this region's nucleotide sequence