Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01823 and ECD_01824 are separated by 337 nucleotides ECD_01824 and ECD_01825 are separated by 127 nucleotides
ECD_01823: ECD_01823 - glucose-6-phosphate 1-dehydrogenase, at 1,880,563 to 1,882,038
_01823
ECD_01824: ECD_01824 - putative DNA-binding transcriptional regulator, at 1,882,376 to 1,883,245
_01824
ECD_01825: ECD_01825 - pyruvate kinase II, at 1,883,373 to 1,884,815
_01825
Position (kb)
1882
1883
1884 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1882.051 kb on - strand at 1882.056 kb on - strand at 1882.056 kb on - strand at 1882.072 kb on - strand at 1882.072 kb on - strand at 1882.382 kb on - strand at 1882.668 kb on + strand, within ECD_01824 at 1882.819 kb on + strand, within ECD_01824 at 1882.885 kb on + strand, within ECD_01824 at 1882.885 kb on + strand, within ECD_01824 at 1882.886 kb on - strand, within ECD_01824 at 1883.055 kb on + strand, within ECD_01824 at 1883.065 kb on + strand, within ECD_01824 at 1883.075 kb on + strand, within ECD_01824 at 1883.075 kb on + strand, within ECD_01824 at 1883.075 kb on + strand, within ECD_01824 at 1883.075 kb on + strand, within ECD_01824 at 1883.076 kb on - strand, within ECD_01824 at 1883.115 kb on + strand, within ECD_01824 at 1883.115 kb on + strand, within ECD_01824 at 1883.115 kb on + strand, within ECD_01824 at 1883.116 kb on - strand, within ECD_01824 at 1883.116 kb on - strand, within ECD_01824 at 1883.224 kb on + strand at 1883.229 kb on + strand at 1883.270 kb on + strand at 1883.291 kb on + strand at 1883.367 kb on + strand at 1883.367 kb on + strand at 1883.370 kb on + strand at 1883.370 kb on + strand at 1883.370 kb on + strand at 1883.370 kb on + strand at 1883.712 kb on + strand, within ECD_01825 at 1883.855 kb on + strand, within ECD_01825 at 1883.855 kb on + strand, within ECD_01825 at 1883.855 kb on + strand, within ECD_01825 at 1883.941 kb on + strand, within ECD_01825 at 1883.988 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825 at 1884.245 kb on + strand, within ECD_01825
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,882,051 - +1.0 1,882,056 - -0.4 1,882,056 - -0.2 1,882,072 - -1.1 1,882,072 - -0.8 1,882,382 - +0.4 1,882,668 + ECD_01824 0.34 -0.2 1,882,819 + ECD_01824 0.51 +1.0 1,882,885 + ECD_01824 0.59 +0.2 1,882,885 + ECD_01824 0.59 +1.2 1,882,886 - ECD_01824 0.59 +0.6 1,883,055 + ECD_01824 0.78 +1.4 1,883,065 + ECD_01824 0.79 -0.9 1,883,075 + ECD_01824 0.80 +2.1 1,883,075 + ECD_01824 0.80 +2.2 1,883,075 + ECD_01824 0.80 +0.8 1,883,075 + ECD_01824 0.80 +1.4 1,883,076 - ECD_01824 0.80 -1.8 1,883,115 + ECD_01824 0.85 +2.1 1,883,115 + ECD_01824 0.85 +1.6 1,883,115 + ECD_01824 0.85 +1.7 1,883,116 - ECD_01824 0.85 -0.4 1,883,116 - ECD_01824 0.85 -0.3 1,883,224 + +0.5 1,883,229 + -1.6 1,883,270 + +1.2 1,883,291 + +2.6 1,883,367 + +0.3 1,883,367 + -0.0 1,883,370 + -0.0 1,883,370 + -0.5 1,883,370 + -0.4 1,883,370 + -0.0 1,883,712 + ECD_01825 0.23 -1.1 1,883,855 + ECD_01825 0.33 +1.2 1,883,855 + ECD_01825 0.33 -1.6 1,883,855 + ECD_01825 0.33 -1.7 1,883,941 + ECD_01825 0.39 +0.1 1,883,988 + ECD_01825 0.43 +1.7 1,884,245 + ECD_01825 0.60 +0.3 1,884,245 + ECD_01825 0.60 +1.1
Or see this region's nucleotide sequence