Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01696 and ECD_01697 are separated by 162 nucleotides ECD_01697 and ECD_01698 are separated by 132 nucleotides ECD_01698 and ECD_01699 are separated by 24 nucleotides
ECD_01696: ECD_01696 - 2-deoxyglucose-6-P phosphatase, at 1,753,793 to 1,754,461
_01696
ECD_01697: ECD_01697 - inner membrane protein regulated by LexA, at 1,754,624 to 1,755,214
_01697
ECD_01698: ECD_01698 - putative transporter, at 1,755,347 to 1,756,738
_01698
ECD_01699: ECD_01699 - uncharacterized protein, at 1,756,763 to 1,757,557
_01699
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-1
0
1
2 at 1755.164 kb on - strand at 1755.260 kb on + strand at 1755.260 kb on + strand at 1755.325 kb on + strand at 1755.326 kb on - strand at 1755.328 kb on + strand at 1755.497 kb on + strand, within ECD_01698 at 1755.497 kb on + strand, within ECD_01698 at 1755.520 kb on + strand, within ECD_01698 at 1755.560 kb on + strand, within ECD_01698 at 1755.806 kb on + strand, within ECD_01698 at 1755.806 kb on + strand, within ECD_01698 at 1755.806 kb on + strand, within ECD_01698 at 1755.907 kb on + strand, within ECD_01698 at 1756.489 kb on + strand, within ECD_01698 at 1756.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,755,164 - +2.4 1,755,260 + +0.0 1,755,260 + -1.3 1,755,325 + -0.1 1,755,326 - +1.4 1,755,328 + +1.5 1,755,497 + ECD_01698 0.11 +1.2 1,755,497 + ECD_01698 0.11 +2.1 1,755,520 + ECD_01698 0.12 +1.1 1,755,560 + ECD_01698 0.15 +2.0 1,755,806 + ECD_01698 0.33 +1.1 1,755,806 + ECD_01698 0.33 +1.1 1,755,806 + ECD_01698 0.33 -0.3 1,755,907 + ECD_01698 0.40 +0.5 1,756,489 + ECD_01698 0.82 +0.4 1,756,629 + +0.7
Or see this region's nucleotide sequence