Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01352 and ECD_01353 are separated by 207 nucleotides ECD_01353 and ECD_01354 overlap by 4 nucleotides ECD_01354 and ECD_01355 are separated by 7 nucleotides ECD_01355 and ECD_01356 are separated by 171 nucleotides
ECD_01352: ECD_01352 - fermentative D-lactate dehydrogenase, NAD-dependent, at 1,417,413 to 1,418,402
_01352
ECD_01353: ECD_01353 - putative membrane-anchored protein, function unknown, at 1,418,610 to 1,421,249
_01353
ECD_01354: ECD_01354 - lipoprotein, at 1,421,246 to 1,421,431
_01354
ECD_01355: ECD_01355 - DUF1318 family protein, at 1,421,439 to 1,421,765
_01355
ECD_01356: ECD_01356 - transcriptional activator for tynA and feaB, at 1,421,937 to 1,422,842
_01356
Position (kb)
1418
1419
1420
1421
1422 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1417.841 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1417.980 kb on - strand, within ECD_01352 at 1418.191 kb on + strand, within ECD_01352 at 1418.191 kb on + strand, within ECD_01352 at 1418.385 kb on - strand at 1418.602 kb on - strand at 1418.624 kb on + strand at 1418.739 kb on - strand at 1419.128 kb on + strand, within ECD_01353 at 1419.863 kb on + strand, within ECD_01353 at 1421.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,417,841 - ECD_01352 0.43 -0.5 1,417,980 - ECD_01352 0.57 +0.5 1,417,980 - ECD_01352 0.57 +1.3 1,417,980 - ECD_01352 0.57 +2.1 1,418,191 + ECD_01352 0.79 +1.6 1,418,191 + ECD_01352 0.79 +1.4 1,418,385 - +1.1 1,418,602 - -2.1 1,418,624 + -1.3 1,418,739 - -0.2 1,419,128 + ECD_01353 0.20 +0.8 1,419,863 + ECD_01353 0.47 +0.7 1,421,069 + +0.7
Or see this region's nucleotide sequence