Strain Fitness in Escherichia coli BL21 around ECD_01320

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01319 and ECD_01320 are separated by 477 nucleotidesECD_01320 and ECD_01321 are separated by 128 nucleotides ECD_01319: ECD_01319 - putative Zn(II) transporter, at 1,393,218 to 1,394,201 _01319 ECD_01320: ECD_01320 - ATP-dependent RNA helicase, specific for 23S rRNA, at 1,394,679 to 1,396,052 _01320 ECD_01321: ECD_01321 - tRNA s(2)C32 thioltransferase, iron sulfur cluster protein, at 1,396,181 to 1,397,116 _01321 Position (kb) 1394 1395 1396 1397Strain fitness (log2 ratio) -1 0 1at 1394.020 kb on - strand, within ECD_01319at 1394.362 kb on + strandat 1394.601 kb on + strandat 1395.050 kb on + strand, within ECD_01320at 1395.122 kb on + strand, within ECD_01320at 1395.123 kb on - strand, within ECD_01320at 1395.385 kb on + strand, within ECD_01320at 1395.791 kb on + strand, within ECD_01320at 1396.607 kb on - strand, within ECD_01321at 1396.607 kb on - strand, within ECD_01321at 1396.960 kb on - strand, within ECD_01321at 1397.015 kb on - strand, within ECD_01321at 1397.015 kb on - strand, within ECD_01321

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,394,020 - ECD_01319 0.82 -0.7
1,394,362 + +0.8
1,394,601 + +0.4
1,395,050 + ECD_01320 0.27 -0.0
1,395,122 + ECD_01320 0.32 -0.6
1,395,123 - ECD_01320 0.32 +0.9
1,395,385 + ECD_01320 0.51 +0.4
1,395,791 + ECD_01320 0.81 +1.4
1,396,607 - ECD_01321 0.46 -1.6
1,396,607 - ECD_01321 0.46 +1.3
1,396,960 - ECD_01321 0.83 +0.2
1,397,015 - ECD_01321 0.89 -0.5
1,397,015 - ECD_01321 0.89 +0.5

Or see this region's nucleotide sequence