Strain Fitness in Escherichia coli BL21 around ECD_01290

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01288 and ECD_01289 overlap by 14 nucleotidesECD_01289 and ECD_01290 are separated by 30 nucleotidesECD_01290 and ECD_01291 are separated by 18 nucleotidesECD_01291 and ECD_01292 are separated by 9 nucleotides ECD_01288: ECD_01288 - putative sugar ABC transporter permease, at 1,359,588 to 1,360,469 _01288 ECD_01289: ECD_01289 - putative sugar ABC transporter permease, at 1,360,456 to 1,361,298 _01289 ECD_01290: ECD_01290 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,361,329 to 1,362,381 _01290 ECD_01291: ECD_01291 - putative TIM alpha/beta barrel enzyme, at 1,362,400 to 1,363,188 _01291 ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253 _01292 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -1 0 1 2at 1360.336 kb on + strand, within ECD_01288at 1360.412 kb on + strandat 1360.808 kb on - strand, within ECD_01289at 1360.809 kb on + strand, within ECD_01289at 1360.810 kb on - strand, within ECD_01289at 1361.179 kb on + strand, within ECD_01289at 1361.239 kb on + strandat 1361.314 kb on + strandat 1361.642 kb on + strand, within ECD_01290at 1361.969 kb on + strand, within ECD_01290at 1361.973 kb on + strand, within ECD_01290at 1362.091 kb on + strand, within ECD_01290at 1362.322 kb on + strandat 1362.332 kb on - strandat 1362.624 kb on + strand, within ECD_01291at 1362.920 kb on + strand, within ECD_01291at 1363.015 kb on - strand, within ECD_01291at 1363.096 kb on + strand, within ECD_01291at 1363.106 kb on - strand, within ECD_01291at 1363.109 kb on + strand, within ECD_01291at 1363.110 kb on - strandat 1363.114 kb on + strandat 1363.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,360,336 + ECD_01288 0.85 +0.8
1,360,412 + +1.1
1,360,808 - ECD_01289 0.42 +1.4
1,360,809 + ECD_01289 0.42 +1.8
1,360,810 - ECD_01289 0.42 -0.2
1,361,179 + ECD_01289 0.86 +1.4
1,361,239 + +1.3
1,361,314 + +0.7
1,361,642 + ECD_01290 0.30 -1.1
1,361,969 + ECD_01290 0.61 +0.5
1,361,973 + ECD_01290 0.61 -0.8
1,362,091 + ECD_01290 0.72 -0.8
1,362,322 + +1.5
1,362,332 - +0.5
1,362,624 + ECD_01291 0.28 +0.5
1,362,920 + ECD_01291 0.66 +0.1
1,363,015 - ECD_01291 0.78 +1.6
1,363,096 + ECD_01291 0.88 -0.7
1,363,106 - ECD_01291 0.89 -1.3
1,363,109 + ECD_01291 0.90 +1.0
1,363,110 - +0.3
1,363,114 + +0.7
1,363,282 + +1.8

Or see this region's nucleotide sequence