Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01288 and ECD_01289 overlap by 14 nucleotides ECD_01289 and ECD_01290 are separated by 30 nucleotides ECD_01290 and ECD_01291 are separated by 18 nucleotides ECD_01291 and ECD_01292 are separated by 9 nucleotides
ECD_01288: ECD_01288 - putative sugar ABC transporter permease, at 1,359,588 to 1,360,469
_01288
ECD_01289: ECD_01289 - putative sugar ABC transporter permease, at 1,360,456 to 1,361,298
_01289
ECD_01290: ECD_01290 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 1,361,329 to 1,362,381
_01290
ECD_01291: ECD_01291 - putative TIM alpha/beta barrel enzyme, at 1,362,400 to 1,363,188
_01291
ECD_01292: ECD_01292 - putative NADH-binding oxidoreductase, at 1,363,198 to 1,364,253
_01292
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-1
0
1
2 at 1360.336 kb on + strand, within ECD_01288 at 1360.412 kb on + strand at 1360.808 kb on - strand, within ECD_01289 at 1360.809 kb on + strand, within ECD_01289 at 1360.810 kb on - strand, within ECD_01289 at 1361.179 kb on + strand, within ECD_01289 at 1361.239 kb on + strand at 1361.314 kb on + strand at 1361.642 kb on + strand, within ECD_01290 at 1361.969 kb on + strand, within ECD_01290 at 1361.973 kb on + strand, within ECD_01290 at 1362.091 kb on + strand, within ECD_01290 at 1362.322 kb on + strand at 1362.332 kb on - strand at 1362.624 kb on + strand, within ECD_01291 at 1362.920 kb on + strand, within ECD_01291 at 1363.015 kb on - strand, within ECD_01291 at 1363.096 kb on + strand, within ECD_01291 at 1363.106 kb on - strand, within ECD_01291 at 1363.109 kb on + strand, within ECD_01291 at 1363.110 kb on - strand at 1363.114 kb on + strand at 1363.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,360,336 + ECD_01288 0.85 +0.8 1,360,412 + +1.1 1,360,808 - ECD_01289 0.42 +1.4 1,360,809 + ECD_01289 0.42 +1.8 1,360,810 - ECD_01289 0.42 -0.2 1,361,179 + ECD_01289 0.86 +1.4 1,361,239 + +1.3 1,361,314 + +0.7 1,361,642 + ECD_01290 0.30 -1.1 1,361,969 + ECD_01290 0.61 +0.5 1,361,973 + ECD_01290 0.61 -0.8 1,362,091 + ECD_01290 0.72 -0.8 1,362,322 + +1.5 1,362,332 - +0.5 1,362,624 + ECD_01291 0.28 +0.5 1,362,920 + ECD_01291 0.66 +0.1 1,363,015 - ECD_01291 0.78 +1.6 1,363,096 + ECD_01291 0.88 -0.7 1,363,106 - ECD_01291 0.89 -1.3 1,363,109 + ECD_01291 0.90 +1.0 1,363,110 - +0.3 1,363,114 + +0.7 1,363,282 + +1.8
Or see this region's nucleotide sequence