Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01166 and ECD_01167 are separated by 94 nucleotides ECD_01167 and ECD_01168 are separated by 99 nucleotides ECD_01168 and ECD_01169 are separated by 1 nucleotides
ECD_01166: ECD_01166 - putative cation/proton antiporter, at 1,228,483 to 1,230,219
_01166
ECD_01167: ECD_01167 - murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A, at 1,230,314 to 1,231,228
_01167
ECD_01168: ECD_01168 - lytic murein endotransglycosylase E, at 1,231,328 to 1,231,939
_01168
ECD_01169: ECD_01169 - flagellar velocity braking protein, c-di-GMP-regulated, at 1,231,941 to 1,232,675
_01169
Position (kb)
1230
1231
1232 Strain fitness (log2 ratio)
-1
0
1
2 at 1230.025 kb on - strand, within ECD_01166 at 1230.036 kb on - strand, within ECD_01166 at 1230.036 kb on - strand, within ECD_01166 at 1230.036 kb on - strand, within ECD_01166 at 1230.052 kb on - strand at 1230.155 kb on - strand at 1230.252 kb on + strand at 1230.579 kb on + strand, within ECD_01167 at 1230.595 kb on + strand, within ECD_01167 at 1231.186 kb on + strand at 1231.262 kb on - strand at 1231.262 kb on - strand at 1231.263 kb on + strand at 1231.313 kb on - strand at 1231.575 kb on + strand, within ECD_01168 at 1231.763 kb on + strand, within ECD_01168 at 1231.907 kb on + strand at 1231.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,230,025 - ECD_01166 0.89 +0.8 1,230,036 - ECD_01166 0.89 +1.6 1,230,036 - ECD_01166 0.89 +2.2 1,230,036 - ECD_01166 0.89 +1.7 1,230,052 - +0.0 1,230,155 - +0.2 1,230,252 + +2.0 1,230,579 + ECD_01167 0.29 +0.4 1,230,595 + ECD_01167 0.31 -1.4 1,231,186 + +0.8 1,231,262 - +0.5 1,231,262 - -1.2 1,231,263 + -0.0 1,231,313 - -0.1 1,231,575 + ECD_01168 0.40 -1.1 1,231,763 + ECD_01168 0.71 +1.2 1,231,907 + -1.4 1,231,994 + -0.9
Or see this region's nucleotide sequence