Strain Fitness in Escherichia coli BL21 around ECD_01167

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01166 and ECD_01167 are separated by 94 nucleotidesECD_01167 and ECD_01168 are separated by 99 nucleotidesECD_01168 and ECD_01169 are separated by 1 nucleotides ECD_01166: ECD_01166 - putative cation/proton antiporter, at 1,228,483 to 1,230,219 _01166 ECD_01167: ECD_01167 - murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A, at 1,230,314 to 1,231,228 _01167 ECD_01168: ECD_01168 - lytic murein endotransglycosylase E, at 1,231,328 to 1,231,939 _01168 ECD_01169: ECD_01169 - flagellar velocity braking protein, c-di-GMP-regulated, at 1,231,941 to 1,232,675 _01169 Position (kb) 1230 1231 1232Strain fitness (log2 ratio) -1 0 1 2at 1230.025 kb on - strand, within ECD_01166at 1230.036 kb on - strand, within ECD_01166at 1230.036 kb on - strand, within ECD_01166at 1230.036 kb on - strand, within ECD_01166at 1230.052 kb on - strandat 1230.155 kb on - strandat 1230.252 kb on + strandat 1230.579 kb on + strand, within ECD_01167at 1230.595 kb on + strand, within ECD_01167at 1231.186 kb on + strandat 1231.262 kb on - strandat 1231.262 kb on - strandat 1231.263 kb on + strandat 1231.313 kb on - strandat 1231.575 kb on + strand, within ECD_01168at 1231.763 kb on + strand, within ECD_01168at 1231.907 kb on + strandat 1231.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,230,025 - ECD_01166 0.89 +0.8
1,230,036 - ECD_01166 0.89 +1.6
1,230,036 - ECD_01166 0.89 +2.2
1,230,036 - ECD_01166 0.89 +1.7
1,230,052 - +0.0
1,230,155 - +0.2
1,230,252 + +2.0
1,230,579 + ECD_01167 0.29 +0.4
1,230,595 + ECD_01167 0.31 -1.4
1,231,186 + +0.8
1,231,262 - +0.5
1,231,262 - -1.2
1,231,263 + -0.0
1,231,313 - -0.1
1,231,575 + ECD_01168 0.40 -1.1
1,231,763 + ECD_01168 0.71 +1.2
1,231,907 + -1.4
1,231,994 + -0.9

Or see this region's nucleotide sequence