Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00979 and ECD_00980 overlap by 4 nucleotides ECD_00980 and ECD_00981 are separated by 133 nucleotides ECD_00981 and ECD_00982 are separated by 11 nucleotides
ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841
_00979
ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695
_00980
ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373
_00981
ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521
_00982
Position (kb)
1042
1043
1044
1045 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1042.098 kb on + strand, within ECD_00980 at 1042.341 kb on - strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.371 kb on - strand, within ECD_00980 at 1042.482 kb on + strand, within ECD_00980 at 1042.504 kb on + strand, within ECD_00980 at 1042.504 kb on + strand, within ECD_00980 at 1042.504 kb on + strand, within ECD_00980 at 1042.504 kb on + strand, within ECD_00980 at 1042.541 kb on + strand, within ECD_00980 at 1042.542 kb on - strand, within ECD_00980 at 1042.542 kb on - strand, within ECD_00980 at 1042.560 kb on - strand, within ECD_00980 at 1042.661 kb on + strand at 1042.661 kb on + strand at 1042.662 kb on - strand at 1042.704 kb on + strand at 1042.746 kb on - strand at 1042.930 kb on + strand at 1042.933 kb on + strand at 1042.970 kb on + strand at 1042.971 kb on - strand at 1043.087 kb on + strand, within ECD_00981 at 1043.422 kb on + strand, within ECD_00981 at 1043.422 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.444 kb on + strand, within ECD_00981 at 1043.449 kb on - strand, within ECD_00981 at 1043.727 kb on + strand, within ECD_00981 at 1043.794 kb on + strand, within ECD_00981 at 1043.795 kb on - strand, within ECD_00981 at 1043.808 kb on + strand, within ECD_00981 at 1044.273 kb on - strand at 1044.620 kb on - strand, within ECD_00982 at 1044.643 kb on + strand, within ECD_00982 at 1044.947 kb on + strand, within ECD_00982
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,042,098 + ECD_00980 0.30 -1.4 1,042,341 - ECD_00980 0.59 +0.4 1,042,370 + ECD_00980 0.62 +0.4 1,042,370 + ECD_00980 0.62 +1.6 1,042,370 + ECD_00980 0.62 +1.3 1,042,370 + ECD_00980 0.62 +1.3 1,042,371 - ECD_00980 0.62 +1.6 1,042,482 + ECD_00980 0.75 -2.1 1,042,504 + ECD_00980 0.78 +0.1 1,042,504 + ECD_00980 0.78 -1.0 1,042,504 + ECD_00980 0.78 +2.3 1,042,504 + ECD_00980 0.78 +0.5 1,042,541 + ECD_00980 0.82 +0.8 1,042,542 - ECD_00980 0.82 -0.9 1,042,542 - ECD_00980 0.82 -0.4 1,042,560 - ECD_00980 0.84 +1.4 1,042,661 + -0.4 1,042,661 + +0.8 1,042,662 - -0.2 1,042,704 + +1.8 1,042,746 - +0.7 1,042,930 + -1.8 1,042,933 + -0.4 1,042,970 + -0.1 1,042,971 - -0.1 1,043,087 + ECD_00981 0.17 +1.2 1,043,422 + ECD_00981 0.38 -0.7 1,043,422 + ECD_00981 0.38 +0.1 1,043,444 + ECD_00981 0.40 -1.3 1,043,444 + ECD_00981 0.40 -0.7 1,043,449 - ECD_00981 0.40 -1.0 1,043,727 + ECD_00981 0.58 -0.2 1,043,794 + ECD_00981 0.62 +0.5 1,043,795 - ECD_00981 0.63 +0.9 1,043,808 + ECD_00981 0.63 -1.5 1,044,273 - -0.1 1,044,620 - ECD_00982 0.21 +1.3 1,044,643 + ECD_00982 0.23 -1.3 1,044,947 + ECD_00982 0.49 +1.2
Or see this region's nucleotide sequence