Strain Fitness in Escherichia coli BL21 around ECD_00964

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00962 and ECD_00963 are separated by 218 nucleotidesECD_00963 and ECD_00964 overlap by 38 nucleotidesECD_00964 and ECD_00965 are separated by 18 nucleotidesECD_00965 and ECD_00966 are separated by 122 nucleotides ECD_00962: ECD_00962 - SOS cell division inhibitor, at 1,025,499 to 1,026,008 _00962 ECD_00963: ECD_00963 - CRP-S-dependent promoter expression factor, at 1,026,227 to 1,026,856 _00963 ECD_00964: ECD_00964 - putative transporter, FUSC superfamily inner membrane protein, at 1,026,819 to 1,028,972 _00964 ECD_00965: ECD_00965 - DUF307 family inner membrane protein, at 1,028,991 to 1,029,437 _00965 ECD_00966: ECD_00966 - DNA helicase IV, at 1,029,560 to 1,031,614 _00966 Position (kb) 1026 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1025.848 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.913 kb on - strand, within ECD_00962at 1026.004 kb on + strandat 1026.005 kb on - strandat 1026.005 kb on - strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.009 kb on - strandat 1026.045 kb on - strandat 1026.254 kb on + strandat 1026.254 kb on + strandat 1026.408 kb on + strand, within ECD_00963at 1026.467 kb on + strand, within ECD_00963at 1026.489 kb on + strand, within ECD_00963at 1026.598 kb on + strand, within ECD_00963at 1026.661 kb on + strand, within ECD_00963at 1026.661 kb on + strand, within ECD_00963at 1026.663 kb on + strand, within ECD_00963at 1026.981 kb on + strandat 1027.024 kb on - strandat 1027.024 kb on - strandat 1027.040 kb on - strand, within ECD_00964at 1027.079 kb on + strand, within ECD_00964at 1027.115 kb on + strand, within ECD_00964at 1027.116 kb on - strand, within ECD_00964at 1027.117 kb on + strand, within ECD_00964at 1027.117 kb on + strand, within ECD_00964at 1027.118 kb on - strand, within ECD_00964at 1027.200 kb on - strand, within ECD_00964at 1027.471 kb on - strand, within ECD_00964at 1027.476 kb on - strand, within ECD_00964at 1027.633 kb on - strand, within ECD_00964at 1027.633 kb on - strand, within ECD_00964at 1027.647 kb on - strand, within ECD_00964at 1027.681 kb on + strand, within ECD_00964at 1027.682 kb on - strand, within ECD_00964at 1027.848 kb on - strand, within ECD_00964at 1028.099 kb on + strand, within ECD_00964at 1028.254 kb on + strand, within ECD_00964at 1028.298 kb on + strand, within ECD_00964at 1028.299 kb on - strand, within ECD_00964at 1028.508 kb on - strand, within ECD_00964at 1028.594 kb on + strand, within ECD_00964at 1028.594 kb on + strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.595 kb on - strand, within ECD_00964at 1028.600 kb on - strand, within ECD_00964at 1028.923 kb on + strandat 1028.973 kb on - strandat 1028.993 kb on - strandat 1029.169 kb on - strand, within ECD_00965at 1029.450 kb on + strandat 1029.528 kb on + strandat 1029.551 kb on + strandat 1029.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,025,848 - ECD_00962 0.68 +0.8
1,025,863 - ECD_00962 0.71 +1.1
1,025,863 - ECD_00962 0.71 +2.1
1,025,863 - ECD_00962 0.71 +0.6
1,025,863 - ECD_00962 0.71 +1.8
1,025,913 - ECD_00962 0.81 +1.6
1,026,004 + +3.5
1,026,005 - +1.9
1,026,005 - +1.4
1,026,008 + +1.4
1,026,008 + +1.9
1,026,008 + +2.2
1,026,008 + +0.5
1,026,008 + +1.5
1,026,008 + +2.2
1,026,008 + +1.8
1,026,009 - +1.2
1,026,045 - +2.8
1,026,254 + +0.9
1,026,254 + +0.8
1,026,408 + ECD_00963 0.29 -1.0
1,026,467 + ECD_00963 0.38 +1.1
1,026,489 + ECD_00963 0.42 +2.0
1,026,598 + ECD_00963 0.59 +0.7
1,026,661 + ECD_00963 0.69 -0.5
1,026,661 + ECD_00963 0.69 +0.6
1,026,663 + ECD_00963 0.69 -0.8
1,026,981 + +1.2
1,027,024 - -0.6
1,027,024 - -0.2
1,027,040 - ECD_00964 0.10 +0.6
1,027,079 + ECD_00964 0.12 +0.3
1,027,115 + ECD_00964 0.14 -0.3
1,027,116 - ECD_00964 0.14 -0.6
1,027,117 + ECD_00964 0.14 +0.6
1,027,117 + ECD_00964 0.14 +0.8
1,027,118 - ECD_00964 0.14 -0.2
1,027,200 - ECD_00964 0.18 +0.9
1,027,471 - ECD_00964 0.30 +0.8
1,027,476 - ECD_00964 0.31 -0.2
1,027,633 - ECD_00964 0.38 -0.8
1,027,633 - ECD_00964 0.38 +0.2
1,027,647 - ECD_00964 0.38 +0.4
1,027,681 + ECD_00964 0.40 -2.2
1,027,682 - ECD_00964 0.40 -1.2
1,027,848 - ECD_00964 0.48 -0.8
1,028,099 + ECD_00964 0.59 -1.2
1,028,254 + ECD_00964 0.67 +0.4
1,028,298 + ECD_00964 0.69 -2.7
1,028,299 - ECD_00964 0.69 +0.3
1,028,508 - ECD_00964 0.78 +0.2
1,028,594 + ECD_00964 0.82 +1.5
1,028,594 + ECD_00964 0.82 -0.4
1,028,595 - ECD_00964 0.82 -0.8
1,028,595 - ECD_00964 0.82 -0.7
1,028,595 - ECD_00964 0.82 +1.0
1,028,595 - ECD_00964 0.82 -0.3
1,028,600 - ECD_00964 0.83 -1.3
1,028,923 + -1.4
1,028,973 - +0.0
1,028,993 - +0.6
1,029,169 - ECD_00965 0.40 -0.5
1,029,450 + -0.1
1,029,528 + -0.3
1,029,551 + -0.8
1,029,717 + +1.3

Or see this region's nucleotide sequence