Strain Fitness in Escherichia coli BL21 around ECD_00962

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00961 and ECD_00962 are separated by 356 nucleotidesECD_00962 and ECD_00963 are separated by 218 nucleotidesECD_00963 and ECD_00964 overlap by 38 nucleotides ECD_00961: ECD_00961 - outer membrane protein A (3a, at 1,024,102 to 1,025,142 _00961 ECD_00962: ECD_00962 - SOS cell division inhibitor, at 1,025,499 to 1,026,008 _00962 ECD_00963: ECD_00963 - CRP-S-dependent promoter expression factor, at 1,026,227 to 1,026,856 _00963 ECD_00964: ECD_00964 - putative transporter, FUSC superfamily inner membrane protein, at 1,026,819 to 1,028,972 _00964 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -1 0 1 2 3at 1024.783 kb on - strand, within ECD_00961at 1024.800 kb on - strand, within ECD_00961at 1024.800 kb on - strand, within ECD_00961at 1024.800 kb on - strand, within ECD_00961at 1024.800 kb on - strand, within ECD_00961at 1024.800 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.866 kb on - strand, within ECD_00961at 1024.893 kb on - strand, within ECD_00961at 1024.900 kb on - strand, within ECD_00961at 1024.938 kb on - strand, within ECD_00961at 1024.938 kb on - strand, within ECD_00961at 1024.938 kb on - strand, within ECD_00961at 1024.938 kb on - strand, within ECD_00961at 1025.058 kb on - strandat 1025.090 kb on - strandat 1025.195 kb on - strandat 1025.235 kb on - strandat 1025.235 kb on - strandat 1025.281 kb on - strandat 1025.295 kb on - strandat 1025.513 kb on + strandat 1025.579 kb on + strand, within ECD_00962at 1025.580 kb on - strand, within ECD_00962at 1025.674 kb on + strand, within ECD_00962at 1025.675 kb on - strand, within ECD_00962at 1025.675 kb on - strand, within ECD_00962at 1025.675 kb on - strand, within ECD_00962at 1025.745 kb on + strand, within ECD_00962at 1025.745 kb on + strand, within ECD_00962at 1025.746 kb on - strand, within ECD_00962at 1025.746 kb on - strand, within ECD_00962at 1025.746 kb on - strand, within ECD_00962at 1025.848 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.863 kb on - strand, within ECD_00962at 1025.913 kb on - strand, within ECD_00962at 1026.004 kb on + strandat 1026.005 kb on - strandat 1026.005 kb on - strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.008 kb on + strandat 1026.009 kb on - strandat 1026.045 kb on - strandat 1026.254 kb on + strandat 1026.254 kb on + strandat 1026.408 kb on + strand, within ECD_00963at 1026.467 kb on + strand, within ECD_00963at 1026.489 kb on + strand, within ECD_00963at 1026.598 kb on + strand, within ECD_00963at 1026.661 kb on + strand, within ECD_00963at 1026.661 kb on + strand, within ECD_00963at 1026.663 kb on + strand, within ECD_00963at 1026.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,024,783 - ECD_00961 0.65 +1.6
1,024,800 - ECD_00961 0.67 +1.1
1,024,800 - ECD_00961 0.67 +0.9
1,024,800 - ECD_00961 0.67 +1.5
1,024,800 - ECD_00961 0.67 +0.7
1,024,800 - ECD_00961 0.67 +2.5
1,024,866 - ECD_00961 0.73 +0.8
1,024,866 - ECD_00961 0.73 -0.3
1,024,866 - ECD_00961 0.73 -0.4
1,024,866 - ECD_00961 0.73 +1.4
1,024,866 - ECD_00961 0.73 +2.2
1,024,866 - ECD_00961 0.73 -0.1
1,024,866 - ECD_00961 0.73 +0.0
1,024,893 - ECD_00961 0.76 +1.0
1,024,900 - ECD_00961 0.77 +1.0
1,024,938 - ECD_00961 0.80 -0.3
1,024,938 - ECD_00961 0.80 +1.6
1,024,938 - ECD_00961 0.80 +0.4
1,024,938 - ECD_00961 0.80 +1.6
1,025,058 - +1.6
1,025,090 - +1.9
1,025,195 - +2.1
1,025,235 - +1.7
1,025,235 - +1.5
1,025,281 - +1.4
1,025,295 - -0.2
1,025,513 + +1.3
1,025,579 + ECD_00962 0.16 +2.0
1,025,580 - ECD_00962 0.16 +2.0
1,025,674 + ECD_00962 0.34 +1.7
1,025,675 - ECD_00962 0.35 +2.9
1,025,675 - ECD_00962 0.35 +2.0
1,025,675 - ECD_00962 0.35 +2.0
1,025,745 + ECD_00962 0.48 +1.8
1,025,745 + ECD_00962 0.48 +1.9
1,025,746 - ECD_00962 0.48 +2.3
1,025,746 - ECD_00962 0.48 +0.5
1,025,746 - ECD_00962 0.48 +2.2
1,025,848 - ECD_00962 0.68 +0.8
1,025,863 - ECD_00962 0.71 +1.1
1,025,863 - ECD_00962 0.71 +2.1
1,025,863 - ECD_00962 0.71 +0.7
1,025,863 - ECD_00962 0.71 +1.8
1,025,913 - ECD_00962 0.81 +1.6
1,026,004 + +3.6
1,026,005 - +1.9
1,026,005 - +1.4
1,026,008 + +1.4
1,026,008 + +1.9
1,026,008 + +2.2
1,026,008 + +0.6
1,026,008 + +1.5
1,026,008 + +2.2
1,026,008 + +1.8
1,026,009 - +1.2
1,026,045 - +2.9
1,026,254 + +0.9
1,026,254 + +0.8
1,026,408 + ECD_00963 0.29 -1.0
1,026,467 + ECD_00963 0.38 +1.1
1,026,489 + ECD_00963 0.42 +2.0
1,026,598 + ECD_00963 0.59 +0.7
1,026,661 + ECD_00963 0.69 -0.5
1,026,661 + ECD_00963 0.69 +0.6
1,026,663 + ECD_00963 0.69 -0.8
1,026,981 + +1.2

Or see this region's nucleotide sequence