Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00861 and ECD_00862 overlap by 4 nucleotides ECD_00862 and ECD_00863 are separated by 59 nucleotides ECD_00863 and ECD_00864 are separated by 40 nucleotides
ECD_00861: ECD_00861 - putrescine ABC transporter permease, at 900,838 to 901,791
_00861
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181
_00863
ECD_00864: ECD_00864 - 23S rRNA m(5)U747 methyltransferase, SAM-dependent, at 903,222 to 904,349
_00864
Position (kb) 902
903
904 Strain fitness (log2 ratio) -2
-1
0
1 at 902.039 kb on + strand, within ECD_00862 at 902.039 kb on + strand, within ECD_00862 at 902.210 kb on + strand, within ECD_00862 at 902.247 kb on + strand, within ECD_00862 at 902.402 kb on + strand, within ECD_00862 at 902.663 kb on + strand at 902.789 kb on - strand, within ECD_00863 at 902.791 kb on + strand, within ECD_00863 at 902.981 kb on + strand, within ECD_00863 at 903.011 kb on + strand, within ECD_00863 at 903.221 kb on + strand at 903.392 kb on + strand, within ECD_00864 at 903.558 kb on + strand, within ECD_00864 at 903.559 kb on - strand, within ECD_00864 at 903.572 kb on + strand, within ECD_00864 at 903.886 kb on - strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 902,039 + ECD_00862 0.30 +0.8 902,039 + ECD_00862 0.30 +0.3 902,210 + ECD_00862 0.50 +0.1 902,247 + ECD_00862 0.54 -0.1 902,402 + ECD_00862 0.73 -1.1 902,663 + -0.1 902,789 - ECD_00863 0.20 +1.1 902,791 + ECD_00863 0.20 +1.5 902,981 + ECD_00863 0.59 +0.3 903,011 + ECD_00863 0.65 -0.9 903,221 + -1.1 903,392 + ECD_00864 0.15 -1.1 903,558 + ECD_00864 0.30 +0.3 903,559 - ECD_00864 0.30 -2.0 903,572 + ECD_00864 0.31 +1.4 903,886 - ECD_00864 0.59 -0.9 903,929 + ECD_00864 0.63 -0.2 903,929 + ECD_00864 0.63 +1.0
Or see this region's nucleotide sequence