Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00860 and ECD_00861 are separated by 9 nucleotides ECD_00861 and ECD_00862 overlap by 4 nucleotides ECD_00862 and ECD_00863 are separated by 59 nucleotides ECD_00863 and ECD_00864 are separated by 40 nucleotides
ECD_00860: ECD_00860 - putrescine ABC transporter ATPase, at 899,695 to 900,828
_00860
ECD_00861: ECD_00861 - putrescine ABC transporter permease, at 900,838 to 901,791
_00861
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181
_00863
ECD_00864: ECD_00864 - 23S rRNA m(5)U747 methyltransferase, SAM-dependent, at 903,222 to 904,349
_00864
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 901.036 kb on - strand, within ECD_00861 at 901.132 kb on + strand, within ECD_00861 at 901.133 kb on - strand, within ECD_00861 at 901.178 kb on + strand, within ECD_00861 at 901.218 kb on + strand, within ECD_00861 at 901.219 kb on - strand, within ECD_00861 at 901.401 kb on + strand, within ECD_00861 at 901.420 kb on + strand, within ECD_00861 at 901.560 kb on + strand, within ECD_00861 at 902.039 kb on + strand, within ECD_00862 at 902.039 kb on + strand, within ECD_00862 at 902.210 kb on + strand, within ECD_00862 at 902.247 kb on + strand, within ECD_00862 at 902.402 kb on + strand, within ECD_00862 at 902.663 kb on + strand at 902.789 kb on - strand, within ECD_00863 at 902.791 kb on + strand, within ECD_00863 at 902.981 kb on + strand, within ECD_00863 at 903.011 kb on + strand, within ECD_00863 at 903.221 kb on + strand at 903.392 kb on + strand, within ECD_00864 at 903.558 kb on + strand, within ECD_00864 at 903.559 kb on - strand, within ECD_00864 at 903.572 kb on + strand, within ECD_00864
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 901,036 - ECD_00861 0.21 -1.7 901,132 + ECD_00861 0.31 -1.6 901,133 - ECD_00861 0.31 +1.1 901,178 + ECD_00861 0.36 -2.8 901,218 + ECD_00861 0.40 +0.5 901,219 - ECD_00861 0.40 -0.6 901,401 + ECD_00861 0.59 +1.0 901,420 + ECD_00861 0.61 -0.2 901,560 + ECD_00861 0.76 +0.6 902,039 + ECD_00862 0.30 +0.8 902,039 + ECD_00862 0.30 +0.3 902,210 + ECD_00862 0.50 +0.1 902,247 + ECD_00862 0.54 -0.1 902,402 + ECD_00862 0.73 -1.1 902,663 + -0.1 902,789 - ECD_00863 0.20 +1.1 902,791 + ECD_00863 0.20 +1.5 902,981 + ECD_00863 0.59 +0.3 903,011 + ECD_00863 0.65 -0.9 903,221 + -1.1 903,392 + ECD_00864 0.15 -1.1 903,558 + ECD_00864 0.30 +0.3 903,559 - ECD_00864 0.30 -2.0 903,572 + ECD_00864 0.31 +1.5
Or see this region's nucleotide sequence