Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00778 and ECD_00779 are separated by 403 nucleotides ECD_00779 and ECD_00780 are separated by 298 nucleotides
ECD_00778: ECD_00778 - glutamine transporter subunit, at 831,250 to 831,996
_00778
ECD_00779: ECD_00779 - Fe-binding and storage protein; stress-inducible DNA-binding protein, at 832,400 to 832,903
_00779
ECD_00780: ECD_00780 - threonine and homoserine efflux system, at 833,202 to 834,089
_00780
Position (kb) 832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.504 kb on - strand, within ECD_00778 at 831.563 kb on + strand, within ECD_00778 at 831.678 kb on - strand, within ECD_00778 at 831.706 kb on - strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 832.273 kb on + strand at 832.371 kb on - strand at 832.412 kb on - strand at 832.612 kb on + strand, within ECD_00779 at 832.635 kb on - strand, within ECD_00779 at 832.925 kb on + strand at 832.926 kb on - strand at 832.948 kb on + strand at 832.949 kb on - strand at 832.952 kb on + strand at 833.078 kb on + strand at 833.130 kb on + strand at 833.293 kb on - strand, within ECD_00780 at 833.423 kb on - strand, within ECD_00780 at 833.817 kb on - strand, within ECD_00780 at 833.861 kb on - strand, within ECD_00780
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 831,504 - ECD_00778 0.34 -1.8 831,563 + ECD_00778 0.42 +0.4 831,678 - ECD_00778 0.57 -0.9 831,706 - ECD_00778 0.61 +0.5 831,860 + ECD_00778 0.82 -0.7 831,860 + ECD_00778 0.82 -0.8 831,861 - ECD_00778 0.82 +0.4 831,861 - ECD_00778 0.82 -1.9 831,861 - ECD_00778 0.82 +0.5 831,861 - ECD_00778 0.82 +2.5 832,273 + -0.0 832,371 - -0.4 832,412 - +0.3 832,612 + ECD_00779 0.42 -2.0 832,635 - ECD_00779 0.47 -0.5 832,925 + -1.4 832,926 - +0.8 832,948 + +0.5 832,949 - +0.0 832,952 + -1.5 833,078 + +0.1 833,130 + -1.0 833,293 - ECD_00780 0.10 -0.5 833,423 - ECD_00780 0.25 -1.3 833,817 - ECD_00780 0.69 -2.0 833,861 - ECD_00780 0.74 -1.6
Or see this region's nucleotide sequence