Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00686 and ECD_00687 are separated by 365 nucleotides ECD_00687 and ECD_00688 overlap by 1 nucleotides ECD_00688 and ECD_00689 are separated by 103 nucleotides
ECD_00686: ECD_00686 - dihydrolipoyltranssuccinase, at 720,092 to 721,309
_00686
ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841
_00687
ECD_00688: ECD_00688 - succinyl-CoA synthetase, NAD(P)-binding, alpha subunit, at 722,841 to 723,710
_00688
ECD_00689: ECD_00689 - transcriptional repressor for the mannosyl-D-glycerate catabolic operon, at 723,814 to 724,536
_00689
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.307 kb on + strand at 721.307 kb on + strand at 721.308 kb on - strand at 721.310 kb on + strand at 721.310 kb on + strand at 721.311 kb on - strand at 721.316 kb on - strand at 721.333 kb on + strand at 721.398 kb on - strand at 721.422 kb on + strand at 721.488 kb on - strand at 721.513 kb on + strand at 721.514 kb on - strand at 721.624 kb on - strand at 721.633 kb on - strand at 721.749 kb on + strand at 721.753 kb on - strand at 721.925 kb on - strand, within ECD_00687 at 721.999 kb on + strand, within ECD_00687 at 722.022 kb on + strand, within ECD_00687 at 722.146 kb on + strand, within ECD_00687 at 722.187 kb on + strand, within ECD_00687 at 722.428 kb on + strand, within ECD_00687 at 722.446 kb on - strand, within ECD_00687 at 722.714 kb on + strand, within ECD_00687 at 722.775 kb on + strand at 722.839 kb on + strand at 722.840 kb on - strand at 722.840 kb on - strand at 722.939 kb on + strand, within ECD_00688 at 722.956 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.055 kb on - strand, within ECD_00688 at 723.058 kb on + strand, within ECD_00688 at 723.120 kb on - strand, within ECD_00688 at 723.315 kb on + strand, within ECD_00688 at 723.537 kb on + strand, within ECD_00688 at 723.537 kb on + strand, within ECD_00688 at 723.573 kb on - strand, within ECD_00688 at 723.708 kb on + strand at 723.718 kb on + strand at 723.728 kb on + strand at 723.794 kb on + strand at 723.794 kb on + strand at 723.794 kb on + strand at 723.795 kb on - strand at 723.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 721,307 + -0.3 721,307 + +1.3 721,308 - +0.0 721,310 + -1.4 721,310 + +1.5 721,311 - +0.0 721,316 - +0.4 721,333 + +1.6 721,398 - -0.1 721,422 + +1.8 721,488 - +0.8 721,513 + +2.6 721,514 - -0.3 721,624 - -1.6 721,633 - +0.0 721,749 + -1.8 721,753 - -0.3 721,925 - ECD_00687 0.21 +0.2 721,999 + ECD_00687 0.28 +0.0 722,022 + ECD_00687 0.30 +1.1 722,146 + ECD_00687 0.40 -1.8 722,187 + ECD_00687 0.44 -1.4 722,428 + ECD_00687 0.65 -1.8 722,446 - ECD_00687 0.66 -1.1 722,714 + ECD_00687 0.89 -0.4 722,775 + -0.4 722,839 + +0.0 722,840 - -0.7 722,840 - -0.1 722,939 + ECD_00688 0.11 +0.2 722,956 + ECD_00688 0.13 +1.5 723,054 + ECD_00688 0.24 +1.5 723,054 + ECD_00688 0.24 -1.3 723,054 + ECD_00688 0.24 +1.3 723,054 + ECD_00688 0.24 -1.4 723,054 + ECD_00688 0.24 -1.7 723,054 + ECD_00688 0.24 -0.4 723,054 + ECD_00688 0.24 +0.7 723,055 - ECD_00688 0.25 -0.3 723,058 + ECD_00688 0.25 +0.2 723,120 - ECD_00688 0.32 +0.5 723,315 + ECD_00688 0.54 -0.4 723,537 + ECD_00688 0.80 +0.4 723,537 + ECD_00688 0.80 -1.4 723,573 - ECD_00688 0.84 +0.9 723,708 + +0.4 723,718 + -0.0 723,728 + -2.0 723,794 + -0.5 723,794 + -0.6 723,794 + +0.4 723,795 - -0.6 723,795 - +0.4
Or see this region's nucleotide sequence