Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00658 and ECD_00659 overlap by 1 nucleotides ECD_00659 and ECD_00660 are separated by 117 nucleotides ECD_00660 and ECD_00661 overlap by 4 nucleotides ECD_00661 and ECD_00662 are separated by 195 nucleotides
ECD_00658: ECD_00658 - Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor, at 689,635 to 691,299
_00658
ECD_00659: ECD_00659 - putative membrane protein, at 691,299 to 691,625
_00659
ECD_00660: ECD_00660 - conserved protein, rhs-like protein, at 691,743 to 693,176
_00660
ECD_00661: ECD_00661 - putative secreted protein, at 693,173 to 693,742
_00661
ECD_00662: ECD_00662 - hypothetical protein, at 693,938 to 694,213
_00662
Position (kb) 691
692
693
694 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.830 kb on + strand, within ECD_00658 at 690.831 kb on - strand, within ECD_00658 at 691.042 kb on - strand, within ECD_00658 at 691.093 kb on - strand, within ECD_00658 at 691.649 kb on + strand at 691.649 kb on + strand at 691.651 kb on + strand at 691.655 kb on + strand at 692.626 kb on - strand, within ECD_00660 at 692.697 kb on + strand, within ECD_00660 at 692.807 kb on - strand, within ECD_00660 at 692.895 kb on + strand, within ECD_00660 at 692.945 kb on + strand, within ECD_00660 at 693.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 690,830 + ECD_00658 0.72 -1.2 690,831 - ECD_00658 0.72 +0.6 691,042 - ECD_00658 0.85 +2.1 691,093 - ECD_00658 0.88 -0.2 691,649 + -0.9 691,649 + -0.4 691,651 + +2.0 691,655 + -2.2 692,626 - ECD_00660 0.62 -1.1 692,697 + ECD_00660 0.67 -1.2 692,807 - ECD_00660 0.74 +1.1 692,895 + ECD_00660 0.80 -2.1 692,945 + ECD_00660 0.84 -0.2 693,035 - -0.4
Or see this region's nucleotide sequence