Strain Fitness in Escherichia coli BL21 around ECD_00631

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_t00009 and ECD_t00010 are separated by 47 nucleotidesECD_t00010 and ECD_t00011 are separated by 15 nucleotidesECD_t00011 and ECD_t00012 are separated by 34 nucleotidesECD_t00012 and ECD_t00013 are separated by 23 nucleotidesECD_t00013 and ECD_t00014 are separated by 8 nucleotidesECD_t00014 and ECD_00631 are separated by 380 nucleotidesECD_00631 and ECD_00632 are separated by 396 nucleotides ECD_t00009: ECD_t00009 - tRNA-Gln, at 656,416 to 656,490 _t00009 ECD_t00010: ECD_t00010 - tRNA-Met, at 656,538 to 656,614 _t00010 ECD_t00011: ECD_t00011 - tRNA-Gln, at 656,630 to 656,704 _t00011 ECD_t00012: ECD_t00012 - tRNA-Gln, at 656,739 to 656,813 _t00012 ECD_t00013: ECD_t00013 - tRNA-Leu, at 656,837 to 656,921 _t00013 ECD_t00014: ECD_t00014 - tRNA-Met, at 656,930 to 657,006 _t00014 ECD_00631: ECD_00631 - asparagine synthetase B, at 657,387 to 659,051 _00631 ECD_00632: ECD_00632 - UMP phosphatase, at 659,448 to 660,200 _00632 Position (kb) 657 658 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.399 kb on - strandat 656.399 kb on - strandat 656.578 kb on - strand, within ECD_t00010at 656.640 kb on - strand, within ECD_t00011at 657.142 kb on - strandat 657.153 kb on - strandat 657.160 kb on - strandat 657.160 kb on - strandat 657.182 kb on + strandat 657.182 kb on + strandat 657.182 kb on + strandat 657.183 kb on - strandat 657.201 kb on + strandat 657.228 kb on + strandat 657.228 kb on + strandat 657.247 kb on + strandat 657.262 kb on + strandat 657.262 kb on + strandat 657.262 kb on + strandat 657.344 kb on - strandat 657.392 kb on + strandat 657.392 kb on + strandat 657.393 kb on - strandat 657.393 kb on - strandat 657.394 kb on + strandat 657.395 kb on - strandat 657.473 kb on + strandat 657.566 kb on - strand, within ECD_00631at 657.566 kb on - strand, within ECD_00631at 657.592 kb on + strand, within ECD_00631at 657.677 kb on - strand, within ECD_00631at 657.677 kb on - strand, within ECD_00631at 657.791 kb on + strand, within ECD_00631at 657.901 kb on + strand, within ECD_00631at 657.902 kb on - strand, within ECD_00631at 657.905 kb on + strand, within ECD_00631at 657.905 kb on + strand, within ECD_00631at 657.905 kb on + strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 657.906 kb on - strand, within ECD_00631at 658.060 kb on + strand, within ECD_00631at 658.096 kb on + strand, within ECD_00631at 658.096 kb on + strand, within ECD_00631at 658.096 kb on + strand, within ECD_00631at 658.111 kb on + strand, within ECD_00631at 658.147 kb on - strand, within ECD_00631at 658.248 kb on + strand, within ECD_00631at 658.249 kb on - strand, within ECD_00631at 658.249 kb on - strand, within ECD_00631at 658.303 kb on + strand, within ECD_00631at 658.480 kb on + strand, within ECD_00631at 658.481 kb on - strand, within ECD_00631at 658.514 kb on - strand, within ECD_00631at 658.583 kb on - strand, within ECD_00631at 658.583 kb on - strand, within ECD_00631at 658.583 kb on - strand, within ECD_00631at 658.612 kb on + strand, within ECD_00631at 658.612 kb on + strand, within ECD_00631at 658.612 kb on + strand, within ECD_00631at 658.612 kb on + strand, within ECD_00631at 658.612 kb on + strand, within ECD_00631at 658.613 kb on - strand, within ECD_00631at 658.613 kb on - strand, within ECD_00631at 658.613 kb on - strand, within ECD_00631at 658.861 kb on + strand, within ECD_00631at 658.862 kb on - strand, within ECD_00631at 658.998 kb on - strandat 659.051 kb on + strandat 659.051 kb on + strandat 659.051 kb on + strandat 659.051 kb on + strandat 659.052 kb on - strandat 659.354 kb on - strandat 659.446 kb on - strandat 659.446 kb on - strandat 659.454 kb on - strandat 659.480 kb on - strandat 659.683 kb on + strand, within ECD_00632at 659.684 kb on - strand, within ECD_00632at 659.684 kb on - strand, within ECD_00632at 659.684 kb on - strand, within ECD_00632at 659.806 kb on + strand, within ECD_00632at 659.807 kb on - strand, within ECD_00632at 659.807 kb on - strand, within ECD_00632at 659.817 kb on - strand, within ECD_00632at 659.836 kb on + strand, within ECD_00632at 659.837 kb on - strand, within ECD_00632at 659.885 kb on + strand, within ECD_00632at 659.938 kb on + strand, within ECD_00632at 659.994 kb on - strand, within ECD_00632at 659.994 kb on - strand, within ECD_00632at 659.996 kb on - strand, within ECD_00632at 660.013 kb on - strand, within ECD_00632

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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656,392 - +2.1
656,392 - -0.9
656,392 - +2.7
656,392 - +1.4
656,392 - +0.5
656,392 - +1.4
656,399 - +2.2
656,399 - +2.5
656,578 - ECD_t00010 0.52 +1.9
656,640 - ECD_t00011 0.13 +0.4
657,142 - +1.8
657,153 - +0.1
657,160 - +1.7
657,160 - -0.9
657,182 + +0.1
657,182 + -1.1
657,182 + -0.0
657,183 - +0.0
657,201 + -1.0
657,228 + -0.0
657,228 + +0.1
657,247 + -0.6
657,262 + -0.1
657,262 + +2.4
657,262 + +0.7
657,344 - -1.4
657,392 + +0.9
657,392 + +0.6
657,393 - +0.5
657,393 - -0.2
657,394 + +4.1
657,395 - -2.0
657,473 + -0.2
657,566 - ECD_00631 0.11 +1.3
657,566 - ECD_00631 0.11 +0.0
657,592 + ECD_00631 0.12 -1.3
657,677 - ECD_00631 0.17 -2.9
657,677 - ECD_00631 0.17 -1.2
657,791 + ECD_00631 0.24 +0.6
657,901 + ECD_00631 0.31 -0.3
657,902 - ECD_00631 0.31 -0.3
657,905 + ECD_00631 0.31 -1.1
657,905 + ECD_00631 0.31 +0.0
657,905 + ECD_00631 0.31 -2.2
657,906 - ECD_00631 0.31 -1.3
657,906 - ECD_00631 0.31 +0.0
657,906 - ECD_00631 0.31 +0.4
657,906 - ECD_00631 0.31 +1.0
657,906 - ECD_00631 0.31 -1.4
657,906 - ECD_00631 0.31 -0.9
658,060 + ECD_00631 0.40 +0.7
658,096 + ECD_00631 0.43 -0.9
658,096 + ECD_00631 0.43 -0.3
658,096 + ECD_00631 0.43 -0.7
658,111 + ECD_00631 0.43 +1.9
658,147 - ECD_00631 0.46 -0.2
658,248 + ECD_00631 0.52 -2.1
658,249 - ECD_00631 0.52 +0.1
658,249 - ECD_00631 0.52 +1.1
658,303 + ECD_00631 0.55 -0.1
658,480 + ECD_00631 0.66 +1.3
658,481 - ECD_00631 0.66 -1.1
658,514 - ECD_00631 0.68 +1.5
658,583 - ECD_00631 0.72 -0.3
658,583 - ECD_00631 0.72 +0.2
658,583 - ECD_00631 0.72 -0.4
658,612 + ECD_00631 0.74 +1.4
658,612 + ECD_00631 0.74 +1.2
658,612 + ECD_00631 0.74 +0.7
658,612 + ECD_00631 0.74 +0.4
658,612 + ECD_00631 0.74 +0.4
658,613 - ECD_00631 0.74 -0.6
658,613 - ECD_00631 0.74 +0.6
658,613 - ECD_00631 0.74 -1.1
658,861 + ECD_00631 0.89 -0.3
658,862 - ECD_00631 0.89 +2.0
658,998 - -0.1
659,051 + +0.6
659,051 + +1.1
659,051 + +0.6
659,051 + +1.1
659,052 - -1.1
659,354 - -0.5
659,446 - +1.5
659,446 - -0.7
659,454 - -0.1
659,480 - +0.1
659,683 + ECD_00632 0.31 +1.3
659,684 - ECD_00632 0.31 +0.8
659,684 - ECD_00632 0.31 +1.4
659,684 - ECD_00632 0.31 +0.3
659,806 + ECD_00632 0.48 -0.3
659,807 - ECD_00632 0.48 +1.0
659,807 - ECD_00632 0.48 +0.8
659,817 - ECD_00632 0.49 +1.3
659,836 + ECD_00632 0.52 -2.5
659,837 - ECD_00632 0.52 +0.3
659,885 + ECD_00632 0.58 +0.5
659,938 + ECD_00632 0.65 +0.6
659,994 - ECD_00632 0.73 +0.7
659,994 - ECD_00632 0.73 +1.5
659,996 - ECD_00632 0.73 +1.5
660,013 - ECD_00632 0.75 +1.7

Or see this region's nucleotide sequence