Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00530 and ECD_00531 are separated by 736 nucleotides ECD_00531 and ECD_00532 overlap by 11 nucleotides ECD_00532 and ECD_00533 are separated by 156 nucleotides
ECD_00513: ECD_00513 - hypothetical protein, at 550,550 to 551,146
_00513
ECD_00530: ECD_00530 - hypothetical protein, at 550,995 to 551,267
_00530
ECD_00531: ECD_00531 - copper-sensing histidine kinase in two-component regulatory system with CusR, at 552,004 to 553,452
_00531
ECD_00532: ECD_00532 - response regulator in two-component regulatory system with CusS, at 553,442 to 554,125
_00532
ECD_00533: ECD_00533 - copper/silver efflux system, outer membrane component, at 554,282 to 555,655
_00533
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 551.267 kb on + strand at 551.290 kb on - strand at 552.024 kb on + strand at 552.260 kb on - strand, within ECD_00531 at 552.260 kb on - strand, within ECD_00531 at 552.467 kb on - strand, within ECD_00531 at 552.853 kb on - strand, within ECD_00531 at 552.897 kb on + strand, within ECD_00531 at 552.999 kb on + strand, within ECD_00531 at 553.076 kb on + strand, within ECD_00531 at 553.076 kb on + strand, within ECD_00531 at 553.158 kb on - strand, within ECD_00531 at 553.176 kb on + strand, within ECD_00531 at 553.308 kb on + strand at 553.443 kb on + strand at 553.470 kb on + strand at 553.761 kb on - strand, within ECD_00532 at 553.834 kb on - strand, within ECD_00532 at 553.929 kb on - strand, within ECD_00532 at 554.083 kb on - strand at 554.281 kb on + strand at 554.422 kb on + strand, within ECD_00533
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 551,267 + +0.1 551,290 - +0.1 552,024 + -1.9 552,260 - ECD_00531 0.18 -1.9 552,260 - ECD_00531 0.18 +1.0 552,467 - ECD_00531 0.32 +0.5 552,853 - ECD_00531 0.59 -1.1 552,897 + ECD_00531 0.62 -1.3 552,999 + ECD_00531 0.69 +0.7 553,076 + ECD_00531 0.74 -0.7 553,076 + ECD_00531 0.74 -0.2 553,158 - ECD_00531 0.80 -2.9 553,176 + ECD_00531 0.81 -0.4 553,308 + -0.1 553,443 + +0.5 553,470 + +0.7 553,761 - ECD_00532 0.47 +0.4 553,834 - ECD_00532 0.57 -0.3 553,929 - ECD_00532 0.71 -1.3 554,083 - -0.7 554,281 + -0.0 554,422 + ECD_00533 0.10 +0.5
Or see this region's nucleotide sequence