Strain Fitness in Escherichia coli BL21 around ECD_00513

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00513 and ECD_00530 overlap by 152 nucleotidesECD_00530 and ECD_00531 are separated by 736 nucleotides ECD_00513: ECD_00513 - hypothetical protein, at 550,550 to 551,146 _00513 ECD_00530: ECD_00530 - hypothetical protein, at 550,995 to 551,267 _00530 ECD_00531: ECD_00531 - copper-sensing histidine kinase in two-component regulatory system with CusR, at 552,004 to 553,452 _00531 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1at 549.638 kb on + strandat 549.638 kb on + strandat 549.639 kb on - strandat 549.666 kb on + strandat 549.721 kb on + strandat 549.721 kb on + strandat 549.722 kb on - strandat 549.864 kb on - strandat 550.255 kb on + strandat 550.332 kb on - strandat 550.332 kb on - strandat 550.333 kb on + strandat 550.335 kb on + strandat 550.350 kb on + strandat 550.781 kb on + strand, within ECD_00513at 550.801 kb on + strand, within ECD_00513at 550.802 kb on - strand, within ECD_00513at 550.802 kb on - strand, within ECD_00513at 551.267 kb on + strandat 551.290 kb on - strandat 552.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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549,638 + +0.1
549,638 + +0.9
549,639 - -1.6
549,666 + -0.4
549,721 + +0.1
549,721 + +0.5
549,722 - +0.0
549,864 - -1.2
550,255 + -0.6
550,332 - +1.2
550,332 - +0.5
550,333 + +0.3
550,335 + -0.4
550,350 + -0.2
550,781 + ECD_00513 0.39 -0.4
550,801 + ECD_00513 0.42 -0.2
550,802 - ECD_00513 0.42 -1.4
550,802 - ECD_00513 0.42 -1.3
551,267 + +0.1
551,290 - +0.1
552,024 + -1.9

Or see this region's nucleotide sequence