Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00444 and ECD_00445 overlap by 11 nucleotides ECD_00445 and ECD_00446 overlap by 33 nucleotides ECD_00446 and ECD_00447 overlap by 4 nucleotides
ECD_00444: ECD_00444 - putative oxidoreductase, at 487,487 to 488,296
_00444
ECD_00445: ECD_00445 - acyl-CoA thioesterase 1 and protease I and lysophospholipase L1, at 488,286 to 488,912
_00445
ECD_00446: ECD_00446 - putative ABC transporter ATPase, at 488,880 to 489,566
_00446
ECD_00447: ECD_00447 - putative ABC transporter permease, at 489,563 to 491,977
_00447
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 487.998 kb on + strand, within ECD_00444 at 487.998 kb on + strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 488.021 kb on - strand, within ECD_00444 at 488.032 kb on - strand, within ECD_00444 at 488.041 kb on + strand, within ECD_00444 at 488.237 kb on - strand at 488.340 kb on - strand at 488.401 kb on + strand, within ECD_00445 at 488.414 kb on + strand, within ECD_00445 at 488.471 kb on + strand, within ECD_00445 at 488.498 kb on - strand, within ECD_00445 at 488.514 kb on + strand, within ECD_00445 at 488.514 kb on + strand, within ECD_00445 at 488.515 kb on - strand, within ECD_00445 at 488.524 kb on - strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.725 kb on - strand, within ECD_00445 at 488.747 kb on + strand, within ECD_00445 at 488.748 kb on - strand, within ECD_00445 at 489.101 kb on - strand, within ECD_00446 at 489.104 kb on + strand, within ECD_00446 at 489.104 kb on + strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.171 kb on - strand, within ECD_00446 at 489.280 kb on + strand, within ECD_00446 at 489.428 kb on + strand, within ECD_00446 at 489.609 kb on + strand at 489.610 kb on - strand at 489.875 kb on - strand, within ECD_00447 at 489.888 kb on - strand, within ECD_00447 at 489.888 kb on - strand, within ECD_00447 at 489.888 kb on - strand, within ECD_00447 at 489.904 kb on + strand, within ECD_00447 at 489.905 kb on - strand, within ECD_00447 at 490.057 kb on + strand, within ECD_00447 at 490.058 kb on - strand, within ECD_00447 at 490.214 kb on - strand, within ECD_00447 at 490.426 kb on + strand, within ECD_00447 at 490.488 kb on + strand, within ECD_00447 at 490.488 kb on + strand, within ECD_00447 at 490.489 kb on - strand, within ECD_00447
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 487,998 + ECD_00444 0.63 -1.9 487,998 + ECD_00444 0.63 -0.8 487,999 - ECD_00444 0.63 -0.2 487,999 - ECD_00444 0.63 +0.1 487,999 - ECD_00444 0.63 +0.3 488,021 - ECD_00444 0.66 -1.6 488,032 - ECD_00444 0.67 -1.6 488,041 + ECD_00444 0.68 +1.0 488,237 - -1.4 488,340 - +1.1 488,401 + ECD_00445 0.18 -3.1 488,414 + ECD_00445 0.20 -0.4 488,471 + ECD_00445 0.30 +0.4 488,498 - ECD_00445 0.34 +1.2 488,514 + ECD_00445 0.36 +1.0 488,514 + ECD_00445 0.36 +1.5 488,515 - ECD_00445 0.37 +0.4 488,524 - ECD_00445 0.38 +0.6 488,720 + ECD_00445 0.69 +0.7 488,720 + ECD_00445 0.69 -0.1 488,720 + ECD_00445 0.69 +3.1 488,725 - ECD_00445 0.70 +0.1 488,747 + ECD_00445 0.74 +0.9 488,748 - ECD_00445 0.74 -0.1 489,101 - ECD_00446 0.32 -0.3 489,104 + ECD_00446 0.33 -0.3 489,104 + ECD_00446 0.33 -1.0 489,105 - ECD_00446 0.33 -0.8 489,105 - ECD_00446 0.33 -1.4 489,105 - ECD_00446 0.33 +0.5 489,105 - ECD_00446 0.33 -1.1 489,105 - ECD_00446 0.33 -1.4 489,171 - ECD_00446 0.42 -0.6 489,280 + ECD_00446 0.58 -0.2 489,428 + ECD_00446 0.80 +2.0 489,609 + +0.8 489,610 - -1.8 489,875 - ECD_00447 0.13 +0.2 489,888 - ECD_00447 0.13 +0.0 489,888 - ECD_00447 0.13 -0.9 489,888 - ECD_00447 0.13 -0.3 489,904 + ECD_00447 0.14 +1.7 489,905 - ECD_00447 0.14 +1.0 490,057 + ECD_00447 0.20 +0.7 490,058 - ECD_00447 0.20 -1.3 490,214 - ECD_00447 0.27 +0.7 490,426 + ECD_00447 0.36 +0.5 490,488 + ECD_00447 0.38 -1.0 490,488 + ECD_00447 0.38 -1.6 490,489 - ECD_00447 0.38 -0.9
Or see this region's nucleotide sequence