Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00346 and ECD_00347 are separated by 189 nucleotides ECD_00347 and ECD_00348 are separated by 57 nucleotides
ECD_00346: ECD_00346 - exonuclease, dsDNA, ATP-dependent, at 381,152 to 382,354
_00346
ECD_00347: ECD_00347 - response regulator in two-component regulatory system with PhoR, at 382,544 to 383,233
_00347
ECD_00348: ECD_00348 - sensory histidine kinase in two-component regulatory system with PhoB, at 383,291 to 384,586
_00348
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 381.594 kb on + strand, within ECD_00346 at 381.594 kb on + strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.598 kb on + strand, within ECD_00346 at 381.598 kb on + strand, within ECD_00346 at 381.599 kb on - strand, within ECD_00346 at 381.688 kb on + strand, within ECD_00346 at 381.706 kb on - strand, within ECD_00346 at 381.754 kb on + strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.800 kb on + strand, within ECD_00346 at 381.800 kb on + strand, within ECD_00346 at 381.801 kb on - strand, within ECD_00346 at 381.861 kb on + strand, within ECD_00346 at 381.877 kb on - strand, within ECD_00346 at 381.943 kb on + strand, within ECD_00346 at 381.943 kb on + strand, within ECD_00346 at 381.944 kb on - strand, within ECD_00346 at 381.944 kb on - strand, within ECD_00346 at 382.167 kb on + strand, within ECD_00346 at 382.167 kb on + strand, within ECD_00346 at 382.168 kb on - strand, within ECD_00346 at 382.168 kb on - strand, within ECD_00346 at 382.226 kb on - strand, within ECD_00346 at 382.389 kb on - strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.493 kb on + strand at 382.507 kb on + strand at 382.508 kb on - strand at 382.521 kb on + strand at 382.525 kb on + strand at 382.525 kb on + strand at 382.525 kb on + strand at 382.526 kb on - strand at 382.528 kb on + strand at 382.646 kb on + strand, within ECD_00347 at 382.710 kb on + strand, within ECD_00347 at 382.847 kb on + strand, within ECD_00347 at 382.850 kb on - strand, within ECD_00347 at 383.101 kb on + strand, within ECD_00347 at 383.102 kb on - strand, within ECD_00347 at 383.108 kb on + strand, within ECD_00347 at 383.108 kb on + strand, within ECD_00347 at 383.109 kb on - strand, within ECD_00347 at 383.109 kb on - strand, within ECD_00347 at 383.109 kb on - strand, within ECD_00347 at 383.122 kb on + strand, within ECD_00347 at 383.148 kb on + strand, within ECD_00347 at 383.153 kb on - strand, within ECD_00347 at 383.153 kb on - strand, within ECD_00347 at 383.264 kb on + strand at 383.283 kb on + strand at 383.288 kb on + strand at 383.288 kb on + strand at 383.288 kb on + strand at 383.289 kb on - strand at 383.289 kb on - strand at 383.289 kb on - strand at 383.289 kb on - strand at 383.334 kb on + strand at 383.419 kb on + strand at 383.473 kb on + strand, within ECD_00348 at 383.473 kb on + strand, within ECD_00348 at 383.473 kb on + strand, within ECD_00348 at 383.473 kb on + strand, within ECD_00348 at 383.474 kb on - strand, within ECD_00348 at 383.474 kb on - strand, within ECD_00348 at 383.517 kb on + strand, within ECD_00348 at 383.519 kb on + strand, within ECD_00348 at 383.549 kb on - strand, within ECD_00348 at 383.659 kb on + strand, within ECD_00348 at 383.834 kb on + strand, within ECD_00348 at 383.834 kb on + strand, within ECD_00348 at 383.834 kb on + strand, within ECD_00348 at 383.835 kb on - strand, within ECD_00348 at 383.835 kb on - strand, within ECD_00348 at 383.835 kb on - strand, within ECD_00348 at 383.934 kb on + strand, within ECD_00348 at 383.935 kb on - strand, within ECD_00348 at 383.935 kb on - strand, within ECD_00348 at 383.935 kb on - strand, within ECD_00348 at 383.935 kb on - strand, within ECD_00348 at 383.938 kb on + strand, within ECD_00348 at 384.193 kb on + strand, within ECD_00348 at 384.205 kb on - strand, within ECD_00348
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 381,594 + ECD_00346 0.37 -0.6 381,594 + ECD_00346 0.37 +0.4 381,595 - ECD_00346 0.37 +0.7 381,595 - ECD_00346 0.37 +2.9 381,595 - ECD_00346 0.37 -0.7 381,595 - ECD_00346 0.37 +1.0 381,598 + ECD_00346 0.37 +0.2 381,598 + ECD_00346 0.37 +1.3 381,599 - ECD_00346 0.37 +0.0 381,688 + ECD_00346 0.45 -1.3 381,706 - ECD_00346 0.46 -1.9 381,754 + ECD_00346 0.50 +0.1 381,757 - ECD_00346 0.50 +0.1 381,757 - ECD_00346 0.50 +0.7 381,757 - ECD_00346 0.50 -1.4 381,800 + ECD_00346 0.54 -1.0 381,800 + ECD_00346 0.54 -1.7 381,801 - ECD_00346 0.54 +0.5 381,861 + ECD_00346 0.59 -1.9 381,877 - ECD_00346 0.60 +0.9 381,943 + ECD_00346 0.66 -0.8 381,943 + ECD_00346 0.66 -0.0 381,944 - ECD_00346 0.66 +1.0 381,944 - ECD_00346 0.66 +0.6 382,167 + ECD_00346 0.84 -0.3 382,167 + ECD_00346 0.84 +0.1 382,168 - ECD_00346 0.84 +0.2 382,168 - ECD_00346 0.84 +0.1 382,226 - ECD_00346 0.89 +0.5 382,389 - +0.1 382,449 + -2.3 382,449 + -2.0 382,493 + +0.5 382,507 + +0.7 382,508 - +1.6 382,521 + +1.1 382,525 + +0.7 382,525 + +0.0 382,525 + -0.7 382,526 - -0.5 382,528 + +0.7 382,646 + ECD_00347 0.15 -0.6 382,710 + ECD_00347 0.24 +1.4 382,847 + ECD_00347 0.44 +0.6 382,850 - ECD_00347 0.44 +0.1 383,101 + ECD_00347 0.81 +0.9 383,102 - ECD_00347 0.81 -0.9 383,108 + ECD_00347 0.82 +0.4 383,108 + ECD_00347 0.82 +1.7 383,109 - ECD_00347 0.82 +0.2 383,109 - ECD_00347 0.82 -1.4 383,109 - ECD_00347 0.82 -0.6 383,122 + ECD_00347 0.84 +0.1 383,148 + ECD_00347 0.88 +2.2 383,153 - ECD_00347 0.88 +1.2 383,153 - ECD_00347 0.88 +0.3 383,264 + +0.2 383,283 + +0.9 383,288 + +1.4 383,288 + +0.6 383,288 + +1.4 383,289 - +0.6 383,289 - +0.2 383,289 - -0.2 383,289 - -0.8 383,334 + +0.3 383,419 + +1.7 383,473 + ECD_00348 0.14 +1.1 383,473 + ECD_00348 0.14 +0.4 383,473 + ECD_00348 0.14 -3.0 383,473 + ECD_00348 0.14 +0.2 383,474 - ECD_00348 0.14 -1.4 383,474 - ECD_00348 0.14 +1.0 383,517 + ECD_00348 0.17 -0.3 383,519 + ECD_00348 0.18 +1.2 383,549 - ECD_00348 0.20 +0.5 383,659 + ECD_00348 0.28 -0.1 383,834 + ECD_00348 0.42 +1.2 383,834 + ECD_00348 0.42 -1.1 383,834 + ECD_00348 0.42 -0.4 383,835 - ECD_00348 0.42 +2.3 383,835 - ECD_00348 0.42 +0.8 383,835 - ECD_00348 0.42 +0.9 383,934 + ECD_00348 0.50 +0.2 383,935 - ECD_00348 0.50 -0.1 383,935 - ECD_00348 0.50 -1.6 383,935 - ECD_00348 0.50 -0.9 383,935 - ECD_00348 0.50 -1.5 383,938 + ECD_00348 0.50 -0.9 384,193 + ECD_00348 0.70 +1.7 384,205 - ECD_00348 0.71 -1.3
Or see this region's nucleotide sequence