Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00344 and ECD_00345 are separated by 125 nucleotides ECD_00345 and ECD_00346 overlap by 4 nucleotides
ECD_00344: ECD_00344 - L-arabinose-inducible putative transporter, MFS family, at 376,699 to 377,883
_00344
ECD_00345: ECD_00345 - exonuclease, dsDNA, ATP-dependent, at 378,009 to 381,155
_00345
ECD_00346: ECD_00346 - exonuclease, dsDNA, ATP-dependent, at 381,152 to 382,354
_00346
Position (kb) 378
379
380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.156 kb on - strand, within ECD_00344 at 377.156 kb on - strand, within ECD_00344 at 377.156 kb on - strand, within ECD_00344 at 377.167 kb on - strand, within ECD_00344 at 377.210 kb on + strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.223 kb on - strand, within ECD_00344 at 377.223 kb on - strand, within ECD_00344 at 377.383 kb on - strand, within ECD_00344 at 377.745 kb on - strand, within ECD_00344 at 377.747 kb on + strand, within ECD_00344 at 377.757 kb on + strand, within ECD_00344 at 377.930 kb on - strand at 377.937 kb on + strand at 378.006 kb on + strand at 378.011 kb on - strand at 378.027 kb on - strand at 378.105 kb on + strand at 378.105 kb on + strand at 378.228 kb on - strand at 378.237 kb on - strand at 378.385 kb on - strand, within ECD_00345 at 378.495 kb on + strand, within ECD_00345 at 378.496 kb on - strand, within ECD_00345 at 378.582 kb on - strand, within ECD_00345 at 378.970 kb on - strand, within ECD_00345 at 378.970 kb on - strand, within ECD_00345 at 378.990 kb on + strand, within ECD_00345 at 379.198 kb on + strand, within ECD_00345 at 379.215 kb on + strand, within ECD_00345 at 379.509 kb on + strand, within ECD_00345 at 379.657 kb on - strand, within ECD_00345 at 379.778 kb on + strand, within ECD_00345 at 379.821 kb on + strand, within ECD_00345 at 379.968 kb on - strand, within ECD_00345 at 379.990 kb on - strand, within ECD_00345 at 380.108 kb on + strand, within ECD_00345 at 380.133 kb on + strand, within ECD_00345 at 380.133 kb on + strand, within ECD_00345 at 380.208 kb on + strand, within ECD_00345 at 380.762 kb on + strand, within ECD_00345 at 380.763 kb on - strand, within ECD_00345 at 381.115 kb on - strand at 381.350 kb on + strand, within ECD_00346 at 381.351 kb on - strand, within ECD_00346 at 381.458 kb on + strand, within ECD_00346 at 381.594 kb on + strand, within ECD_00346 at 381.594 kb on + strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.595 kb on - strand, within ECD_00346 at 381.598 kb on + strand, within ECD_00346 at 381.598 kb on + strand, within ECD_00346 at 381.599 kb on - strand, within ECD_00346 at 381.688 kb on + strand, within ECD_00346 at 381.706 kb on - strand, within ECD_00346 at 381.754 kb on + strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.757 kb on - strand, within ECD_00346 at 381.800 kb on + strand, within ECD_00346 at 381.800 kb on + strand, within ECD_00346 at 381.801 kb on - strand, within ECD_00346 at 381.861 kb on + strand, within ECD_00346 at 381.877 kb on - strand, within ECD_00346 at 381.943 kb on + strand, within ECD_00346 at 381.943 kb on + strand, within ECD_00346 at 381.944 kb on - strand, within ECD_00346 at 381.944 kb on - strand, within ECD_00346
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 377,156 - ECD_00344 0.39 +1.4 377,156 - ECD_00344 0.39 -0.4 377,156 - ECD_00344 0.39 +0.4 377,167 - ECD_00344 0.39 -2.7 377,210 + ECD_00344 0.43 +0.3 377,211 - ECD_00344 0.43 -0.2 377,211 - ECD_00344 0.43 -0.6 377,211 - ECD_00344 0.43 +0.5 377,211 - ECD_00344 0.43 -0.7 377,211 - ECD_00344 0.43 -0.8 377,211 - ECD_00344 0.43 -3.4 377,223 - ECD_00344 0.44 -2.5 377,223 - ECD_00344 0.44 -1.3 377,383 - ECD_00344 0.58 +0.5 377,745 - ECD_00344 0.88 -1.5 377,747 + ECD_00344 0.88 -1.3 377,757 + ECD_00344 0.89 +2.3 377,930 - +0.5 377,937 + +0.5 378,006 + -0.3 378,011 - +0.8 378,027 - -0.6 378,105 + -1.6 378,105 + -0.5 378,228 - -0.4 378,237 - -1.1 378,385 - ECD_00345 0.12 +1.2 378,495 + ECD_00345 0.15 +0.9 378,496 - ECD_00345 0.15 +1.1 378,582 - ECD_00345 0.18 +0.7 378,970 - ECD_00345 0.31 -0.0 378,970 - ECD_00345 0.31 +1.1 378,990 + ECD_00345 0.31 -0.3 379,198 + ECD_00345 0.38 -1.7 379,215 + ECD_00345 0.38 +0.3 379,509 + ECD_00345 0.48 -0.7 379,657 - ECD_00345 0.52 +0.1 379,778 + ECD_00345 0.56 +1.9 379,821 + ECD_00345 0.58 +1.1 379,968 - ECD_00345 0.62 -1.3 379,990 - ECD_00345 0.63 -2.7 380,108 + ECD_00345 0.67 +1.0 380,133 + ECD_00345 0.67 -0.9 380,133 + ECD_00345 0.67 -0.3 380,208 + ECD_00345 0.70 -0.5 380,762 + ECD_00345 0.87 -1.3 380,763 - ECD_00345 0.88 +0.2 381,115 - -0.2 381,350 + ECD_00346 0.16 +0.2 381,351 - ECD_00346 0.17 +1.6 381,458 + ECD_00346 0.25 +0.0 381,594 + ECD_00346 0.37 -0.6 381,594 + ECD_00346 0.37 +0.4 381,595 - ECD_00346 0.37 +0.7 381,595 - ECD_00346 0.37 +2.9 381,595 - ECD_00346 0.37 -0.7 381,595 - ECD_00346 0.37 +1.0 381,598 + ECD_00346 0.37 +0.2 381,598 + ECD_00346 0.37 +1.3 381,599 - ECD_00346 0.37 +0.0 381,688 + ECD_00346 0.45 -1.3 381,706 - ECD_00346 0.46 -1.9 381,754 + ECD_00346 0.50 +0.1 381,757 - ECD_00346 0.50 +0.1 381,757 - ECD_00346 0.50 +0.7 381,757 - ECD_00346 0.50 -1.4 381,800 + ECD_00346 0.54 -1.0 381,800 + ECD_00346 0.54 -1.7 381,801 - ECD_00346 0.54 +0.5 381,861 + ECD_00346 0.59 -1.9 381,877 - ECD_00346 0.60 +0.9 381,943 + ECD_00346 0.66 -0.8 381,943 + ECD_00346 0.66 -0.0 381,944 - ECD_00346 0.66 +1.0 381,944 - ECD_00346 0.66 +0.6
Or see this region's nucleotide sequence