Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00136 and ECD_00137 are separated by 14 nucleotides ECD_00137 and ECD_00138 are separated by 16 nucleotides ECD_00138 and ECD_00139 are separated by 34 nucleotides ECD_00139 and ECD_00140 are separated by 104 nucleotides
ECD_00136: ECD_00136 - putative fimbrial-like adhesin protein, at 154,468 to 155,070
_00136
ECD_00137: ECD_00137 - putative fimbrial-like adhesin protein, at 155,085 to 155,654
_00137
ECD_00138: ECD_00138 - putative outer membrane usher protein, at 155,671 to 158,271
_00138
ECD_00139: ECD_00139 - putative periplasmic pilin chaperone, at 158,306 to 159,046
_00139
ECD_00140: ECD_00140 - putative fimbrial-like adhesin protein, at 159,151 to 159,735
_00140
Position (kb) 155
156
157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 154.935 kb on + strand, within ECD_00136 at 155.241 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.331 kb on - strand, within ECD_00137 at 155.331 kb on - strand, within ECD_00137 at 155.336 kb on + strand, within ECD_00137 at 156.115 kb on - strand, within ECD_00138 at 156.126 kb on - strand, within ECD_00138 at 156.227 kb on - strand, within ECD_00138 at 156.227 kb on - strand, within ECD_00138 at 156.318 kb on - strand, within ECD_00138 at 156.339 kb on - strand, within ECD_00138 at 156.339 kb on - strand, within ECD_00138 at 156.370 kb on - strand, within ECD_00138 at 156.389 kb on + strand, within ECD_00138 at 156.389 kb on + strand, within ECD_00138 at 156.413 kb on + strand, within ECD_00138 at 156.424 kb on - strand, within ECD_00138 at 156.442 kb on - strand, within ECD_00138 at 156.442 kb on - strand, within ECD_00138 at 156.477 kb on + strand, within ECD_00138 at 156.515 kb on - strand, within ECD_00138 at 156.602 kb on + strand, within ECD_00138 at 156.642 kb on - strand, within ECD_00138 at 156.642 kb on - strand, within ECD_00138 at 157.109 kb on + strand, within ECD_00138 at 157.113 kb on - strand, within ECD_00138 at 157.113 kb on - strand, within ECD_00138 at 157.113 kb on - strand, within ECD_00138 at 157.272 kb on + strand, within ECD_00138 at 157.509 kb on + strand, within ECD_00138 at 157.510 kb on - strand, within ECD_00138 at 157.511 kb on + strand, within ECD_00138 at 157.512 kb on - strand, within ECD_00138 at 157.562 kb on - strand, within ECD_00138 at 157.562 kb on - strand, within ECD_00138 at 157.575 kb on + strand, within ECD_00138 at 157.614 kb on - strand, within ECD_00138 at 157.728 kb on - strand, within ECD_00138 at 158.046 kb on + strand at 158.078 kb on + strand at 158.166 kb on - strand at 158.242 kb on - strand at 158.485 kb on + strand, within ECD_00139 at 158.496 kb on + strand, within ECD_00139 at 158.497 kb on - strand, within ECD_00139 at 158.499 kb on + strand, within ECD_00139 at 158.623 kb on + strand, within ECD_00139 at 158.828 kb on - strand, within ECD_00139
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 154,935 + ECD_00136 0.77 +0.9 155,241 - ECD_00137 0.27 +1.6 155,326 - ECD_00137 0.42 -0.1 155,326 - ECD_00137 0.42 -2.1 155,326 - ECD_00137 0.42 -1.2 155,331 - ECD_00137 0.43 -0.2 155,331 - ECD_00137 0.43 -1.4 155,336 + ECD_00137 0.44 -2.3 156,115 - ECD_00138 0.17 -2.1 156,126 - ECD_00138 0.17 -2.4 156,227 - ECD_00138 0.21 -0.4 156,227 - ECD_00138 0.21 -2.2 156,318 - ECD_00138 0.25 -0.8 156,339 - ECD_00138 0.26 +1.0 156,339 - ECD_00138 0.26 -2.4 156,370 - ECD_00138 0.27 +0.7 156,389 + ECD_00138 0.28 -0.8 156,389 + ECD_00138 0.28 -0.9 156,413 + ECD_00138 0.29 -1.0 156,424 - ECD_00138 0.29 -0.2 156,442 - ECD_00138 0.30 -2.4 156,442 - ECD_00138 0.30 -0.3 156,477 + ECD_00138 0.31 -1.4 156,515 - ECD_00138 0.32 -2.3 156,602 + ECD_00138 0.36 -0.6 156,642 - ECD_00138 0.37 -0.8 156,642 - ECD_00138 0.37 -1.9 157,109 + ECD_00138 0.55 +0.4 157,113 - ECD_00138 0.55 +0.3 157,113 - ECD_00138 0.55 -2.9 157,113 - ECD_00138 0.55 +0.4 157,272 + ECD_00138 0.62 -0.4 157,509 + ECD_00138 0.71 +0.0 157,510 - ECD_00138 0.71 +0.4 157,511 + ECD_00138 0.71 -2.6 157,512 - ECD_00138 0.71 -0.8 157,562 - ECD_00138 0.73 -1.3 157,562 - ECD_00138 0.73 +1.0 157,575 + ECD_00138 0.73 -0.8 157,614 - ECD_00138 0.75 -0.0 157,728 - ECD_00138 0.79 -1.5 158,046 + +0.8 158,078 + +0.7 158,166 - +0.1 158,242 - -0.9 158,485 + ECD_00139 0.24 +0.0 158,496 + ECD_00139 0.26 +0.5 158,497 - ECD_00139 0.26 -0.8 158,499 + ECD_00139 0.26 -2.5 158,623 + ECD_00139 0.43 -2.2 158,828 - ECD_00139 0.70 -2.4
Or see this region's nucleotide sequence