Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00111 and ECD_00112 are separated by 540 nucleotides ECD_00112 and ECD_00113 are separated by 160 nucleotides
ECD_00111: ECD_00111 - aromatic amino acid transporter, at 122,983 to 124,356
_00111
ECD_00112: ECD_00112 - pyruvate dehydrogenase complex repressor; autorepressor, at 124,897 to 125,661
_00112
ECD_00113: ECD_00113 - pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding, at 125,822 to 128,485
_00113
Position (kb) 124
125
126 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 124.007 kb on + strand, within ECD_00111 at 124.008 kb on - strand, within ECD_00111 at 124.012 kb on - strand, within ECD_00111 at 124.235 kb on - strand at 124.235 kb on - strand at 124.235 kb on - strand at 124.291 kb on - strand at 124.299 kb on + strand at 124.389 kb on - strand at 124.708 kb on + strand at 124.728 kb on - strand at 124.731 kb on + strand at 124.749 kb on + strand at 124.750 kb on - strand at 124.751 kb on + strand at 124.883 kb on + strand at 124.903 kb on + strand at 124.903 kb on + strand at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.223 kb on + strand, within ECD_00112 at 125.233 kb on + strand, within ECD_00112 at 125.236 kb on + strand, within ECD_00112 at 125.405 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.461 kb on + strand, within ECD_00112 at 125.510 kb on + strand, within ECD_00112 at 125.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 124,007 + ECD_00111 0.75 +0.2 124,008 - ECD_00111 0.75 +0.5 124,012 - ECD_00111 0.75 -4.1 124,235 - -2.6 124,235 - +0.0 124,235 - -0.3 124,291 - +0.5 124,299 + +0.5 124,389 - +0.3 124,708 + -0.2 124,728 - -0.8 124,731 + +0.5 124,749 + +0.1 124,750 - +1.0 124,751 + +1.7 124,883 + +1.0 124,903 + +0.9 124,903 + +0.6 125,188 + ECD_00112 0.38 +0.3 125,188 + ECD_00112 0.38 +1.3 125,188 + ECD_00112 0.38 +1.8 125,223 + ECD_00112 0.43 -1.1 125,233 + ECD_00112 0.44 +0.4 125,236 + ECD_00112 0.44 +0.3 125,405 + ECD_00112 0.66 +0.8 125,412 + ECD_00112 0.67 +1.2 125,412 + ECD_00112 0.67 +0.8 125,412 + ECD_00112 0.67 +1.0 125,412 + ECD_00112 0.67 +0.5 125,412 + ECD_00112 0.67 -2.2 125,461 + ECD_00112 0.74 +0.0 125,510 + ECD_00112 0.80 -1.1 125,733 + +0.9
Or see this region's nucleotide sequence