Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18685

Experiment: m.b. Nalidixic 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18675 and CA264_18680 are separated by 128 nucleotidesCA264_18680 and CA264_18685 are separated by 78 nucleotidesCA264_18685 and CA264_18690 are separated by 116 nucleotidesCA264_18690 and CA264_18695 overlap by 4 nucleotides CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543 _18675 CA264_18680: CA264_18680 - Fe-S assembly protein IscX, at 4,339,672 to 4,339,908 _18680 CA264_18685: CA264_18685 - ferredoxin, at 4,339,987 to 4,340,301 _18685 CA264_18690: CA264_18690 - hypothetical protein, at 4,340,418 to 4,341,197 _18690 CA264_18695: CA264_18695 - glycogen synthase, at 4,341,194 to 4,342,417 _18695 Position (kb) 4339 4340 4341Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4339.071 kb on - strandat 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.230 kb on - strand, within CA264_18675at 4339.244 kb on + strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.264 kb on - strand, within CA264_18675at 4339.313 kb on + strand, within CA264_18675at 4339.481 kb on + strand, within CA264_18675at 4339.569 kb on + strandat 4339.574 kb on + strandat 4339.575 kb on - strandat 4339.634 kb on - strandat 4339.908 kb on + strandat 4339.930 kb on - strandat 4339.943 kb on + strandat 4339.981 kb on - strandat 4340.334 kb on - strandat 4340.334 kb on - strandat 4340.347 kb on - strandat 4340.443 kb on - strandat 4341.189 kb on + strandat 4341.209 kb on - strandat 4341.209 kb on - strandat 4341.270 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
remove
4,339,071 - -0.1
4,339,224 + CA264_18675 0.36 -0.1
4,339,224 + CA264_18675 0.36 +0.0
4,339,224 + CA264_18675 0.36 +0.2
4,339,225 - CA264_18675 0.36 -1.8
4,339,225 - CA264_18675 0.36 +1.0
4,339,225 - CA264_18675 0.36 -1.0
4,339,225 - CA264_18675 0.36 -0.1
4,339,230 - CA264_18675 0.37 +0.0
4,339,244 + CA264_18675 0.40 +0.6
4,339,258 - CA264_18675 0.43 -0.4
4,339,258 - CA264_18675 0.43 +2.6
4,339,264 - CA264_18675 0.44 -2.0
4,339,313 + CA264_18675 0.54 -0.2
4,339,481 + CA264_18675 0.87 -1.0
4,339,569 + +0.1
4,339,574 + -0.5
4,339,575 - -0.2
4,339,634 - -0.5
4,339,908 + -1.3
4,339,930 - +1.0
4,339,943 + -1.5
4,339,981 - -0.6
4,340,334 - -1.0
4,340,334 - -0.5
4,340,347 - +3.0
4,340,443 - -1.5
4,341,189 + +1.0
4,341,209 - -0.1
4,341,209 - -1.2
4,341,270 + -0.1

Or see this region's nucleotide sequence