Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16105

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16095 and CA264_16100 are separated by 132 nucleotidesCA264_16100 and CA264_16105 are separated by 34 nucleotidesCA264_16105 and CA264_16110 are separated by 118 nucleotides CA264_16095: CA264_16095 - tRNA-Asn, at 3,748,868 to 3,748,941 _16095 CA264_16100: CA264_16100 - hypothetical protein, at 3,749,074 to 3,749,451 _16100 CA264_16105: CA264_16105 - 3-hydroxybutyryl-CoA dehydrogenase, at 3,749,486 to 3,750,346 _16105 CA264_16110: CA264_16110 - phenylalanine--tRNA ligase subunit alpha, at 3,750,465 to 3,751,490 _16110 Position (kb) 3749 3750 3751Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3748.616 kb on + strandat 3748.655 kb on - strandat 3748.685 kb on + strandat 3748.692 kb on - strandat 3748.699 kb on + strandat 3748.699 kb on + strandat 3748.700 kb on - strandat 3748.747 kb on - strandat 3748.770 kb on + strandat 3748.777 kb on - strandat 3749.305 kb on - strand, within CA264_16100at 3749.378 kb on - strand, within CA264_16100at 3749.410 kb on + strand, within CA264_16100at 3749.496 kb on + strandat 3749.496 kb on + strandat 3749.496 kb on + strandat 3749.500 kb on + strandat 3749.501 kb on - strandat 3749.503 kb on - strandat 3749.586 kb on + strand, within CA264_16105at 3749.626 kb on + strand, within CA264_16105at 3749.627 kb on - strand, within CA264_16105at 3749.629 kb on + strand, within CA264_16105at 3749.671 kb on + strand, within CA264_16105at 3749.841 kb on - strand, within CA264_16105at 3750.276 kb on - strandat 3750.312 kb on - strandat 3750.315 kb on - strandat 3750.315 kb on - strandat 3750.321 kb on - strandat 3750.321 kb on - strandat 3750.347 kb on - strandat 3750.389 kb on - strandat 3750.397 kb on - strandat 3750.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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3,748,616 + -2.1
3,748,655 - -0.4
3,748,685 + -1.5
3,748,692 - -5.2
3,748,699 + -0.0
3,748,699 + -2.4
3,748,700 - -3.2
3,748,747 - -1.8
3,748,770 + -0.6
3,748,777 - -2.5
3,749,305 - CA264_16100 0.61 -1.0
3,749,378 - CA264_16100 0.80 -1.6
3,749,410 + CA264_16100 0.89 -0.2
3,749,496 + -0.7
3,749,496 + -0.9
3,749,496 + -0.5
3,749,500 + +3.2
3,749,501 - -0.9
3,749,503 - -0.7
3,749,586 + CA264_16105 0.12 -1.7
3,749,626 + CA264_16105 0.16 -2.0
3,749,627 - CA264_16105 0.16 -1.5
3,749,629 + CA264_16105 0.17 -1.1
3,749,671 + CA264_16105 0.21 +0.2
3,749,841 - CA264_16105 0.41 -1.2
3,750,276 - -1.4
3,750,312 - -1.5
3,750,315 - -0.0
3,750,315 - -0.3
3,750,321 - -1.0
3,750,321 - -1.3
3,750,347 - -0.2
3,750,389 - -0.4
3,750,397 - -0.8
3,750,461 - -0.7

Or see this region's nucleotide sequence